Difference between revisions of "TSS:Hg 103842.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |CELF-2= | ||
| + | |CUG-BP2= | ||
| + | |CUGBP2= | ||
| + | |ETR-3= | ||
| + | |ETR3= | ||
| + | |NAPOR= | ||
| + | |all_trans=NM_001326336:94 NM_001326332:94 NM_001326331:94 NM_001025077:94 NM_001326337:94 NM_001326335:94 NM_001326334:94 NM_001326333:94 ENST00000416382.6:103 AF090693:103 ENST00000631460.1:106 ENST00000633200.1:117 AK297380:117 ENST00000631816.1:159 AK299548:159 NM_001326338:441 NM_001326339:441 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance_to_tss=- | + | |distance=94 |
| + | |distance_to_tss=-105 | ||
| + | |end=11005218 | ||
| + | |end_of_center_position=11005208 | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=BRUNOL3 | + | |gene_alias=BRUNOL3{{!}}CELF-2{{!}}CUG-BP2{{!}}CUGBP2{{!}}ETR-3{{!}}ETR3{{!}}NAPOR |
| − | |gene_description= | + | |gene_description=CUGBP Elav-like family member 2 |
| − | |gene_name=CELF2 | + | |gene_id=10659 |
| + | |gene_name=CUGBP Elav-like family member 2 | ||
| + | |gene_source=HGNC:2550 | ||
| + | |gene_symbol=CELF2 | ||
| + | |gene_synonyms=BRUNOL3 Etr-3 NAPOR-2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2550 | ||
|nearest_ensembl=ENSG00000048740 | |nearest_ensembl=ENSG00000048740 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001326332 |
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=11005196 | ||
| + | |start_of_center_position=11005207 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_001326333.2 NM_001326332.2 NM_001025077.3 NM_001326331.2 NM_001326337.2 NM_001326335.2 NM_001326336.2 NM_001326334.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103842.1 | |tss_id=hg_103842.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0J9YX66 O95319 | ||
}} | }} | ||
Latest revision as of 18:57, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 11005207 |
|---|---|
| End of the center position in the TSS region: | 11005208 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001326333.2 NM_001326332.2 NM_001025077.3 NM_001326331.2 NM_001326337.2 NM_001326335.2 NM_001326336.2 NM_001326334.2 |
|---|---|
| Distance: | 94 |
| Num_trans: | 17 |
| All_trans: | NM_001326336:94 NM_001326332:94 NM_001326331:94 NM_001025077:94 NM_001326337:94 NM_001326335:94 NM_001326334:94 NM_001326333:94 ENST00000416382.6:103 AF090693:103 ENST00000631460.1:106 ENST00000633200.1:117 AK297380:117 ENST00000631816.1:159 AK299548:159 NM_001326338:441 NM_001326339:441 |
TATA-Box annotation
| Distance to TSS: | -105 |
|---|---|
| Nearest PromoterID: | NM_001326332 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
