Difference between revisions of "TSS:Hg 103843.1"
From referenceTSS
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| Line 6: | Line 6: | ||
|ETR3= | |ETR3= | ||
|NAPOR= | |NAPOR= | ||
| − | |all_trans= | + | |all_trans=HGNC:2550 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.025 | |cpg_percent=0.025 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| − | |num_trans= | + | |num_trans=10659 |
|species=human | |species=human | ||
|start=11005301 | |start=11005301 | ||
| Line 34: | Line 34: | ||
|strand=+ | |strand=+ | ||
|tata_box=87(CTGCTTTTAAGG,-,0.00),89(GCTTTTAAGGTA,+,0.00) | |tata_box=87(CTGCTTTTAAGG,-,0.00),89(GCTTTTAAGGTA,+,0.00) | ||
| − | |transcript_name=ENST00000416382.6 ENST00000631460.1 ENST00000633200.1 ENST00000631816.1 | + | |transcript_name=ENST00000416382.6 ENST00000631460.1 ENST00000633200.1 ENST00000631816.1 AF090693 AK297380 AK299548 |
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_103843.1 | |tss_id=hg_103843.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A0J9YX66 A0A0J9YXK1 B4DMB0 B4DS31 O95319 | |uniprot_id=A0A0J9YX66 A0A0J9YXK1 B4DMB0 B4DS31 O95319 | ||
}} | }} | ||
Latest revision as of 18:57, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11005343 |
|---|---|
| End of the center position in the TSS region: | 11005344 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000416382.6 ENST00000631460.1 ENST00000633200.1 ENST00000631816.1 AF090693 AK297380 AK299548 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10659 |
| All_trans: | HGNC:2550 |
TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NM_001326335 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.025 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 87(CTGCTTTTAAGG,-,0.00),89(GCTTTTAAGGTA,+,0.00) |
