Difference between revisions of "TSS:Hg 103844.1"
From referenceTSS
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| Line 6: | Line 6: | ||
|ETR3= | |ETR3= | ||
|NAPOR= | |NAPOR= | ||
| − | |all_trans= | + | |all_trans=HGNC:2550 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| − | |num_trans= | + | |num_trans=10659 |
|species=human | |species=human | ||
|start=11005393 | |start=11005393 | ||
| Line 35: | Line 35: | ||
|tata_box=25(CTGCTTTTAAGG,-,0.00),27(GCTTTTAAGGTA,+,0.00) | |tata_box=25(CTGCTTTTAAGG,-,0.00),27(GCTTTTAAGGTA,+,0.00) | ||
|transcript_name=ENST00000631816.1 AK299548 | |transcript_name=ENST00000631816.1 AK299548 | ||
| − | |tss_classification= | + | |tss_classification=yes |
|tss_id=hg_103844.1 | |tss_id=hg_103844.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id=A0A0J9YX66 B4DS31 | |uniprot_id=A0A0J9YX66 B4DS31 | ||
}} | }} | ||
Latest revision as of 18:57, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11005405 |
|---|---|
| End of the center position in the TSS region: | 11005406 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000631816.1 AK299548 |
|---|---|
| Distance: | -17 |
| Num_trans: | 10659 |
| All_trans: | HGNC:2550 |
TATA-Box annotation
| Distance to TSS: | 93 |
|---|---|
| Nearest PromoterID: | NM_001326335 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.427861 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 25(CTGCTTTTAAGG,-,0.00),27(GCTTTTAAGGTA,+,0.00) |
