Difference between revisions of "TSS:Hg 103858.1"
From referenceTSS
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| Line 6: | Line 6: | ||
|ETR3= | |ETR3= | ||
|NAPOR= | |NAPOR= | ||
| − | |all_trans=AK299983:52 ENST00000399850.7:116 ENST00000417956.6 | + | |all_trans=NM_001326348:-20 NM_001326349:-20 NM_001326347:-20 NM_001326346:-20 AK299983:52 ENST00000399850.7:116 ENST00000417956.6:116 NM_001083591:116 NM_001025076:116 AK297313:177 AK299992:183 AF036956:200 ENST00000608830.5:226 AK293164:226 AF432906:264 AK316354:364 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=-20 |
|distance_to_tss=26 | |distance_to_tss=26 | ||
|end=11164914 | |end=11164914 | ||
| Line 15: | Line 15: | ||
|entrez_id=10659 | |entrez_id=10659 | ||
|gc_percent=0.477612 | |gc_percent=0.477612 | ||
| − | |gene_alias=BRUNOL3 | + | |gene_alias=BRUNOL3{{!}}CELF-2{{!}}CUG-BP2{{!}}CUGBP2{{!}}ETR-3{{!}}ETR3{{!}}NAPOR |
| − | |gene_description= | + | |gene_description=CUGBP Elav-like family member 2 |
|gene_id=10659 | |gene_id=10659 | ||
| − | |gene_name= | + | |gene_name=CUGBP Elav-like family member 2 |
|gene_source=HGNC:2550 | |gene_source=HGNC:2550 | ||
|gene_symbol=CELF2 | |gene_symbol=CELF2 | ||
| Line 28: | Line 28: | ||
|nearest_refseq=NM_006561 | |nearest_refseq=NM_006561 | ||
|nearest_unigene=Hs.309288 | |nearest_unigene=Hs.309288 | ||
| − | |num_trans= | + | |num_trans=16 |
|species=human | |species=human | ||
|start=11164900 | |start=11164900 | ||
|start_of_center_position=11164907 | |start_of_center_position=11164907 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NM_001326347.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103858.1 | |tss_id=hg_103858.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=B4DDE7 B4DZ01 O95319 |
}} | }} | ||
Latest revision as of 18:57, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 11164907 |
|---|---|
| End of the center position in the TSS region: | 11164908 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_001326347.1 |
|---|---|
| Distance: | -20 |
| Num_trans: | 16 |
| All_trans: | NM_001326348:-20 NM_001326349:-20 NM_001326347:-20 NM_001326346:-20 AK299983:52 ENST00000399850.7:116 ENST00000417956.6:116 NM_001083591:116 NM_001025076:116 AK297313:177 AK299992:183 AF036956:200 ENST00000608830.5:226 AK293164:226 AF432906:264 AK316354:364 |
TATA-Box annotation
| Distance to TSS: | 26 |
|---|---|
| Nearest PromoterID: | NM_001326347 |
| Entrez ID: | 10659 |
| Nearest Unigene: | Hs.309288 |
| Nearest Refseq: | NM_006561 |
| Nearest Ensembl: | ENSG00000048740 |
| Gene Name: | CUGBP Elav-like family member 2 |
| Gene Alias: | BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR |
| Gene Description: | CUGBP Elav-like family member 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.477612 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
