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Difference between revisions of "TSS:Hg 103864.1"

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Line 6: Line 6:
 
|ETR3=
 
|ETR3=
 
|NAPOR=
 
|NAPOR=
|all_trans=AK316354:11 AF432906:-82 ENST00000608830.5:-120 uc031vxe.2:-120 AK293164:-120 AF036956:-146 AK299992:-163 AK297313:-169 AK304216:189 ENST00000609870.5:217 ENST00000609692.5:217 uc057rqv.1:217 uc057rqw.1:217 AK310038:217 AK302681:217 ENST00000354897.3:219 uc057rqx.1:219 ENST00000399850.7:-230 ENST00000417956.6:-230 NM_001025076:-230 NM_001083591:-230 uc057rqu.1:-230 uc031vxf.2:-230 AK295511:261 AK299983:-294
+
|all_trans=HGNC:2550
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.07
 
|cpg_percent=0.07
Line 15: Line 15:
 
|entrez_id=10659
 
|entrez_id=10659
 
|gc_percent=0.61194
 
|gc_percent=0.61194
|gene_alias=BRUNOL3
+
|gene_alias=BRUNOL3{{!}}CELF-2{{!}}CUG-BP2{{!}}CUGBP2{{!}}ETR-3{{!}}ETR3{{!}}NAPOR
|gene_description="CUGBP, Elav-like family member 2"
+
|gene_description=CUGBP Elav-like family member 2
 
|gene_id=10659
 
|gene_id=10659
|gene_name="CUGBP, Elav-like family member 2"
+
|gene_name=CUGBP Elav-like family member 2
 
|gene_source=HGNC:2550
 
|gene_source=HGNC:2550
 
|gene_symbol=CELF2
 
|gene_symbol=CELF2
Line 28: Line 28:
 
|nearest_refseq=NM_006561
 
|nearest_refseq=NM_006561
 
|nearest_unigene=Hs.309288
 
|nearest_unigene=Hs.309288
|num_trans=25
+
|num_trans=10659
 
|species=human
 
|species=human
 
|start=11165259
 
|start=11165259

Latest revision as of 18:57, 19 July 2021

Basic information about the TSS


TSS ID:hg_103864.1
Species:human
Chr:chr10
TSS Classification:yes
Start:11165259
End:11165267
Strand:+
TSS Score:1
Start of the center position in the TSS region:11165263
End of the center position in the TSS region:11165264



Gene and protein annotation


Transcript_name:AK316354
Distance:11
GeneID:10659
HGNC/MGI_ID:HGNC:2550
UniProt_ID:
Gene_name:CUGBP Elav-like family member 2
Gene_symbol:CELF2
Gene_synonyms:BRUNOL3 Etr-3 NAPOR-2
Gene_source:HGNC:2550



Transcript annotation


Transcript_name:AK316354
Distance:11
Num_trans:10659
All_trans:HGNC:2550



TATA-Box annotation


Distance to TSS:233
Nearest PromoterID:NM_001083591
Entrez ID:10659
Nearest Unigene:Hs.309288
Nearest Refseq:NM_006561
Nearest Ensembl:ENSG00000048740
Gene Name:CUGBP Elav-like family member 2
Gene Alias:BRUNOL3|CELF-2|CUG-BP2|CUGBP2|ETR-3|ETR3|NAPOR
Gene Description:CUGBP Elav-like family member 2
Gene Type:protein-coding
CpG%:0.07
GC%:0.61194
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):