Difference between revisions of "TSS:Hg 103934.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:17142 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| − | |distance_to_tss= | + | |distance=3 |
| + | |distance_to_tss=396 | ||
| + | |end=13099600 | ||
| + | |end_of_center_position=13099593 | ||
|entrez_id=83643 | |entrez_id=83643 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=coiled-coil domain containing 3 | |gene_description=coiled-coil domain containing 3 | ||
| − | |gene_name= | + | |gene_id=10133 |
| + | |gene_name=optineurin | ||
| + | |gene_source=HGNC:17142 | ||
| + | |gene_symbol=OPTN | ||
| + | |gene_synonyms=FIP-2 FIP2 HIP7 HYPL NRP TFIIIA-INTP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17142 | ||
|nearest_ensembl=ENSG00000151468 | |nearest_ensembl=ENSG00000151468 | ||
|nearest_promoter_id=NM_001282658 | |nearest_promoter_id=NM_001282658 | ||
|nearest_refseq=NM_031455 | |nearest_refseq=NM_031455 | ||
|nearest_unigene=Hs.498720 | |nearest_unigene=Hs.498720 | ||
| − | |tata_box= | + | |num_trans=10133 |
| + | |species=human | ||
| + | |start=13099585 | ||
| + | |start_of_center_position=13099592 | ||
| + | |strand=+ | ||
| + | |tata_box=55(GTATTTTAAAGC,-,0.00) | ||
| + | |transcript_name=ENST00000378764.6 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_103934.1 | |tss_id=hg_103934.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q96CV9 | ||
}} | }} | ||
Latest revision as of 18:59, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 13099592 |
|---|---|
| End of the center position in the TSS region: | 13099593 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000378764.6 |
|---|---|
| Distance: | 3 |
| Num_trans: | 10133 |
| All_trans: | HGNC:17142 |
TATA-Box annotation
| Distance to TSS: | 396 |
|---|---|
| Nearest PromoterID: | NM_001282658 |
| Entrez ID: | 83643 |
| Nearest Unigene: | Hs.498720 |
| Nearest Refseq: | NM_031455 |
| Nearest Ensembl: | ENSG00000151468 |
| Gene Name: | optineurin |
| Gene Alias: | - |
| Gene Description: | coiled-coil domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 55(GTATTTTAAAGC,-,0.00) |
