Difference between revisions of "TSS:Hg 103936.1"
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=NM_001008213:156 NM_021980:156 NM_001008211:156 AK316171:210 AK303715:232 ENST00000487935.1:233 ENST00000482140.5:237 ENST00000378747.8:237 NM_001008212:237 ENST00000378757.6:243 BC013876:243 ENST00000430081.5:247 ENST00000378752.7:247 ENST00000378748.7:247 BC032762:247 AF061034:284 ENST00000378764.6:-299 AF420371:299 AF420372:299 AF420373:299 ENST00000263036.9:-453 AK055403:-453 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
|distance=156 | |distance=156 | ||
| − | |distance_to_tss= | + | |distance_to_tss=75 |
|end=13099926 | |end=13099926 | ||
| + | |end_of_center_position=13099914 | ||
|entrez_id=83643 | |entrez_id=83643 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_031455 | |nearest_refseq=NM_031455 | ||
|nearest_unigene=Hs.498720 | |nearest_unigene=Hs.498720 | ||
| − | |num_trans= | + | |num_trans=22 |
|species=human | |species=human | ||
|start=13099901 | |start=13099901 | ||
| + | |start_of_center_position=13099913 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=NM_021980 NM_001008213 | + | |transcript_name=NM_021980.4 NM_001008213.1 NM_001008211.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_103936.1 | |tss_id=hg_103936.1 | ||
Latest revision as of 18:59, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 13099913 |
|---|---|
| End of the center position in the TSS region: | 13099914 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_021980.4 NM_001008213.1 NM_001008211.1 |
|---|---|
| Distance: | 156 |
| Num_trans: | 22 |
| All_trans: | NM_001008213:156 NM_021980:156 NM_001008211:156 AK316171:210 AK303715:232 ENST00000487935.1:233 ENST00000482140.5:237 ENST00000378747.8:237 NM_001008212:237 ENST00000378757.6:243 BC013876:243 ENST00000430081.5:247 ENST00000378752.7:247 ENST00000378748.7:247 BC032762:247 AF061034:284 ENST00000378764.6:-299 AF420371:299 AF420372:299 AF420373:299 ENST00000263036.9:-453 AK055403:-453 |
TATA-Box annotation
| Distance to TSS: | 75 |
|---|---|
| Nearest PromoterID: | NM_001282658 |
| Entrez ID: | 83643 |
| Nearest Unigene: | Hs.498720 |
| Nearest Refseq: | NM_031455 |
| Nearest Ensembl: | ENSG00000151468 |
| Gene Name: | optineurin |
| Gene Alias: | - |
| Gene Description: | coiled-coil domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
