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Difference between revisions of "TSS:Hg 104235.1"

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{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000417470.1:-16 uc057sfb.1:-16 ENST00000448361.5:-23 uc057sfa.1:-23 ENST00000463688.6:-27 uc057sez.1:-27 ENST00000463409.6:-36 uc057sey.1:-36 ENST00000489125.2:-37 uc057sex.1:-37 ENST00000496071.5:-39 uc057sew.1:-39 ENST00000472610.5:-40 uc057sev.1:-40 ENST00000444869.5:-48 uc057seu.1:-48 AY542159:-50 ENST00000456711.5:-51 uc057set.1:-51 ENST00000470045.1:-53 uc057ses.1:-53 AK295109:-53 KJ893368:-54 ENST00000479958.6:-59 ENST00000602390.5:-59 uc057ser.1:-59 uc009xkg.4:-59 AF078848:-59 AK128789:-59 AK313235:-59 ENST00000468179.6:-69 uc057seq.1:-69 BC022898:-72 AF201948:-79 ENST00000475460.6:-80 uc057sep.1:-80 ENST00000602574.5:-82 uc057seo.1:-82 BX647275:-82 NM_012071:-85 NM_001204062:-85 ENST00000468469.5:256 uc057sfc.1:256 ENST00000376836.7:-494 uc001irf.4:-494
+
|all_trans=HGNC:48326
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.115
 
|cpg_percent=0.115
 
|distance=-16
 
|distance=-16
−
|distance_to_tss=90
+
|distance_to_tss=85
 
|end=22316479
 
|end=22316479
−
|entrez_id=100532731
+
|end_of_center_position=22316474
 +
|entrez_id=23412
 
|gc_percent=0.646766
 
|gc_percent=0.646766
−
|gene_alias=-
+
|gene_alias=BUP{{!}}C10orf8
−
|gene_description=COMMD3-BMI1 readthrough
+
|gene_description=COMM domain containing 3
 
|gene_id=100532731
 
|gene_id=100532731
 
|gene_name=COMMD3-BMI1 readthrough
 
|gene_name=COMMD3-BMI1 readthrough
Line 17: Line 18:
 
|gene_type=protein-coding
 
|gene_type=protein-coding
 
|hgnc_mgi_id=HGNC:48326
 
|hgnc_mgi_id=HGNC:48326
−
|nearest_ensembl=ENSG00000269897
+
|nearest_ensembl=ENSG00000148444
−
|nearest_promoter_id=NM_001204062
+
|nearest_promoter_id=NM_012071
−
|nearest_refseq=NM_001204062
+
|nearest_refseq=NM_012071
−
|nearest_unigene=Hs.380403
+
|nearest_unigene=Hs.534398
−
|num_trans=45
+
|num_trans=100532731
 
|species=human
 
|species=human
 
|start=22316467
 
|start=22316467
 +
|start_of_center_position=22316473
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000417470.1 uc057sfb.1
+
|transcript_name=ENST00000417470.1
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_104235.1
 
|tss_id=hg_104235.1

Latest revision as of 19:05, 19 July 2021

Basic information about the TSS

TSS ID:hg_104235.1
Species:human
Chr:chr10
TSS Classification:yes
Start:22316467
End:22316479
Strand:+
TSS Score:1
Start of the center position in the TSS region:22316473
End of the center position in the TSS region:22316474



Gene and protein annotation

Transcript_name:ENST00000417470.1
Distance:-16
GeneID:100532731
HGNC/MGI_ID:HGNC:48326
UniProt_ID:Q5T8Z1
Gene_name:COMMD3-BMI1 readthrough
Gene_symbol:COMMD3-BMI1
Gene_synonyms:
Gene_source:HGNC:48326



Transcript annotation

Transcript_name:ENST00000417470.1
Distance:-16
Num_trans:100532731
All_trans:HGNC:48326



TATA-Box annotation

Distance to TSS:85
Nearest PromoterID:NM_012071
Entrez ID:23412
Nearest Unigene:Hs.534398
Nearest Refseq:NM_012071
Nearest Ensembl:ENSG00000148444
Gene Name:COMMD3-BMI1 readthrough
Gene Alias:BUP|C10orf8
Gene Description:COMM domain containing 3
Gene Type:protein-coding
CpG%:0.115
GC%:0.646766
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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