Difference between revisions of "TSS:Hg 104237.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:23332 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
|distance=309 | |distance=309 | ||
| − | |distance_to_tss= | + | |distance_to_tss=792 |
|end=22317185 | |end=22317185 | ||
| − | |entrez_id= | + | |end_of_center_position=22317181 |
| + | |entrez_id=23412 | ||
|gc_percent=0.383085 | |gc_percent=0.383085 | ||
| − | |gene_alias= | + | |gene_alias=BUP{{!}}C10orf8 |
| − | |gene_description= | + | |gene_description=COMM domain containing 3 |
|gene_id=23412 | |gene_id=23412 | ||
|gene_name=COMM domain containing 3 | |gene_name=COMM domain containing 3 | ||
| Line 17: | Line 18: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23332 | |hgnc_mgi_id=HGNC:23332 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000148444 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_012071 |
| − | |nearest_refseq= | + | |nearest_refseq=NM_012071 |
| − | |nearest_unigene=Hs. | + | |nearest_unigene=Hs.534398 |
| − | |num_trans= | + | |num_trans=23412 |
|species=human | |species=human | ||
|start=22317175 | |start=22317175 | ||
| + | |start_of_center_position=22317180 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-31(TCTTTTAAGCGA,+,0.00),44(GCTTTTAGATGA,+,0.00) |
| − | |transcript_name=ENST00000472673.5 | + | |transcript_name=ENST00000472673.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104237.1 | |tss_id=hg_104237.1 | ||
Latest revision as of 19:05, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 22317180 |
|---|---|
| End of the center position in the TSS region: | 22317181 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000472673.5 |
|---|---|
| Distance: | 309 |
| Num_trans: | 23412 |
| All_trans: | HGNC:23332 |
TATA-Box annotation
| Distance to TSS: | 792 |
|---|---|
| Nearest PromoterID: | NM_012071 |
| Entrez ID: | 23412 |
| Nearest Unigene: | Hs.534398 |
| Nearest Refseq: | NM_012071 |
| Nearest Ensembl: | ENSG00000148444 |
| Gene Name: | COMM domain containing 3 |
| Gene Alias: | BUP|C10orf8 |
| Gene Description: | COMM domain containing 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.383085 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -31(TCTTTTAAGCGA,+,0.00),44(GCTTTTAGATGA,+,0.00) |
