Difference between revisions of "TSS:Hg 104380.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:44915 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=0 | ||
|distance_to_tss=38 | |distance_to_tss=38 | ||
| + | |end=25651771 | ||
| + | |end_of_center_position=25651751 | ||
|entrez_id=101929052 | |entrez_id=101929052 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 836 | |gene_description=long intergenic non-protein coding RNA 836 | ||
| − | |gene_name=LINC00836 | + | |gene_id=101929052 |
| + | |gene_name=long intergenic non-protein coding RNA 836 | ||
| + | |gene_source=HGNC:44915 | ||
| + | |gene_symbol=LINC00836 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:44915 | ||
|nearest_ensembl=ENSG00000280809 | |nearest_ensembl=ENSG00000280809 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_108068 |
|nearest_refseq=NR_108067 | |nearest_refseq=NR_108067 | ||
|nearest_unigene=Hs.128298 | |nearest_unigene=Hs.128298 | ||
| − | |tata_box= | + | |num_trans=101929052 |
| + | |species=human | ||
| + | |start=25651729 | ||
| + | |start_of_center_position=25651750 | ||
| + | |strand=+ | ||
| + | |tata_box=-26(GCTTTTATGCTG,+,0.00) | ||
| + | |transcript_name=ENST00000656265.1 ENST00000628907.2 ENST00000655478.1 ENST00000669089.1 ENST00000655020.1 ENST00000663043.1 ENST00000648557.1 ENST00000668934.1 ENST00000658893.1 ENST00000625325.2 ENST00000662090.1 ENST00000655854.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104380.1 | |tss_id=hg_104380.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 19:08, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 25651750 |
|---|---|
| End of the center position in the TSS region: | 25651751 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000656265.1 ENST00000628907.2 ENST00000655478.1 ENST00000669089.1 ENST00000655020.1 ENST00000663043.1 ENST00000648557.1 ENST00000668934.1 ENST00000658893.1 ENST00000625325.2 ENST00000662090.1 ENST00000655854.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 101929052 |
| All_trans: | HGNC:44915 |
TATA-Box annotation
| Distance to TSS: | 38 |
|---|---|
| Nearest PromoterID: | NR_108068 |
| Entrez ID: | 101929052 |
| Nearest Unigene: | Hs.128298 |
| Nearest Refseq: | NR_108067 |
| Nearest Ensembl: | ENSG00000280809 |
| Gene Name: | long intergenic non-protein coding RNA 836 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 836 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -26(GCTTTTATGCTG,+,0.00) |
