Difference between revisions of "TSS:Hg 104640.1"
From referenceTSS
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|VLA-BETA= | |VLA-BETA= | ||
|VLAB= | |VLAB= | ||
| − | |all_trans= | + | |all_trans=HGNC:53718 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
|distance=160 | |distance=160 | ||
| − | |distance_to_tss=- | + | |distance_to_tss=-436 |
|end=32958685 | |end=32958685 | ||
|end_of_center_position=32958666 | |end_of_center_position=32958666 | ||
|entrez_id=3688 | |entrez_id=3688 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
| − | |gene_alias=CD29 | + | |gene_alias=CD29{{!}}FNRB{{!}}GPIIA{{!}}MDF2{{!}}MSK12{{!}}VLA-BETA{{!}}VLAB |
|gene_description=integrin subunit beta 1 | |gene_description=integrin subunit beta 1 | ||
| − | |gene_id= | + | |gene_id= |
| − | |gene_name= | + | |gene_name=ITGB1 divergent transcript |
| − | |gene_source= | + | |gene_source=HGNC:53718 |
| − | |gene_symbol= | + | |gene_symbol=ITGB1-DT |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:53718 |
|nearest_ensembl=ENSG00000150093 | |nearest_ensembl=ENSG00000150093 | ||
|nearest_promoter_id=NM_002211 | |nearest_promoter_id=NM_002211 | ||
|nearest_refseq=NM_002211 | |nearest_refseq=NM_002211 | ||
|nearest_unigene=Hs.643813 | |nearest_unigene=Hs.643813 | ||
| − | |num_trans= | + | |num_trans= |
|species=human | |species=human | ||
|start=32958646 | |start=32958646 | ||
|start_of_center_position=32958665 | |start_of_center_position=32958665 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000450890.5 | + | |transcript_name=ENST00000450890.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104640.1 | |tss_id=hg_104640.1 | ||
Latest revision as of 19:14, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 32958665 |
|---|---|
| End of the center position in the TSS region: | 32958666 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000450890.5 |
|---|---|
| Distance: | 160 |
| Num_trans: | |
| All_trans: | HGNC:53718 |
TATA-Box annotation
| Distance to TSS: | -436 |
|---|---|
| Nearest PromoterID: | NM_002211 |
| Entrez ID: | 3688 |
| Nearest Unigene: | Hs.643813 |
| Nearest Refseq: | NM_002211 |
| Nearest Ensembl: | ENSG00000150093 |
| Gene Name: | ITGB1 divergent transcript |
| Gene Alias: | CD29|FNRB|GPIIA|MDF2|MSK12|VLA-BETA|VLAB |
| Gene Description: | integrin subunit beta 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
