Difference between revisions of "TSS:Hg 104744.1"
From referenceTSS
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| Line 4: | Line 4: | ||
|GALNACT2= | |GALNACT2= | ||
|PRO0082= | |PRO0082= | ||
| − | |all_trans= | + | |all_trans=HGNC:24292 |
|beta4GalNAcT= | |beta4GalNAcT= | ||
|chr=chr10 | |chr=chr10 | ||
| Line 11: | Line 11: | ||
|distance_to_tss=1 | |distance_to_tss=1 | ||
|end=43138456 | |end=43138456 | ||
| + | |end_of_center_position=43138446 | ||
|entrez_id=55454 | |entrez_id=55454 | ||
|gc_percent=0.78607 | |gc_percent=0.78607 | ||
| − | |gene_alias=CHGN2 | + | |gene_alias=CHGN2{{!}}ChGn-2{{!}}GALNACT-2{{!}}GALNACT2{{!}}PRO0082{{!}}beta4GalNAcT |
|gene_description=chondroitin sulfate N-acetylgalactosaminyltransferase 2 | |gene_description=chondroitin sulfate N-acetylgalactosaminyltransferase 2 | ||
|gene_id=55454 | |gene_id=55454 | ||
| Line 23: | Line 24: | ||
|hgnc_mgi_id=HGNC:24292 | |hgnc_mgi_id=HGNC:24292 | ||
|nearest_ensembl=ENSG00000169826 | |nearest_ensembl=ENSG00000169826 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_135077 |
|nearest_refseq=NM_018590 | |nearest_refseq=NM_018590 | ||
|nearest_unigene=Hs.657569 | |nearest_unigene=Hs.657569 | ||
| − | |num_trans= | + | |num_trans=55454 |
|species=human | |species=human | ||
|start=43138435 | |start=43138435 | ||
| + | |start_of_center_position=43138445 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000374466.4 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104744.1 | |tss_id=hg_104744.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=Q8N6G5 | + | |uniprot_id=A0A0S2Z5F5 Q8N6G5 |
}} | }} | ||
Latest revision as of 19:16, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 43138445 |
|---|---|
| End of the center position in the TSS region: | 43138446 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000374466.4 |
|---|---|
| Distance: | 0 |
| Num_trans: | 55454 |
| All_trans: | HGNC:24292 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NR_135077 |
| Entrez ID: | 55454 |
| Nearest Unigene: | Hs.657569 |
| Nearest Refseq: | NM_018590 |
| Nearest Ensembl: | ENSG00000169826 |
| Gene Name: | chondroitin sulfate N-acetylgalactosaminyltransferase 2 |
| Gene Alias: | CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT |
| Gene Description: | chondroitin sulfate N-acetylgalactosaminyltransferase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.78607 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
