Difference between revisions of "TSS:Hg 104754.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:4028 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=4 |
|end=43371650 | |end=43371650 | ||
|end_of_center_position=43371640 | |end_of_center_position=43371640 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:4028 | |hgnc_mgi_id=HGNC:4028 | ||
|nearest_ensembl=ENSG00000150201 | |nearest_ensembl=ENSG00000150201 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_173160 |
|nearest_refseq=NM_173160 | |nearest_refseq=NM_173160 | ||
|nearest_unigene=Hs.130497 | |nearest_unigene=Hs.130497 | ||
| − | |num_trans= | + | |num_trans=53828 |
|species=human | |species=human | ||
|start=43371629 | |start=43371629 | ||
|start_of_center_position=43371639 | |start_of_center_position=43371639 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-37(GGGTTTAAAGAG,-,0.00),-35(GTTTAAAGAGCC,+,0.00) |
| − | |transcript_name=ENST00000476166. | + | |transcript_name=ENST00000476166.6 ENST00000616495.1 BC054876 AY358584 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104754.1 | |tss_id=hg_104754.1 | ||
Latest revision as of 19:16, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 43371639 |
|---|---|
| End of the center position in the TSS region: | 43371640 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000476166.6 ENST00000616495.1 BC054876 AY358584 |
|---|---|
| Distance: | 0 |
| Num_trans: | 53828 |
| All_trans: | HGNC:4028 |
TATA-Box annotation
| Distance to TSS: | 4 |
|---|---|
| Nearest PromoterID: | NM_173160 |
| Entrez ID: | 53828 |
| Nearest Unigene: | Hs.130497 |
| Nearest Refseq: | NM_173160 |
| Nearest Ensembl: | ENSG00000150201 |
| Gene Name: | FXYD domain containing ion transport regulator 4 |
| Gene Alias: | CHIF |
| Gene Description: | FXYD domain containing ion transport regulator 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.661692 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -37(GGGTTTAAAGAG,-,0.00),-35(GTTTAAAGAGCC,+,0.00) |
