Difference between revisions of "TSS:Hg 104787.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|5LPG= | |5LPG= | ||
|LOG5= | |LOG5= | ||
| − | |all_trans= | + | |all_trans=HGNC:435 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 12: | Line 12: | ||
|entrez_id=240 | |entrez_id=240 | ||
|gc_percent=0.80597 | |gc_percent=0.80597 | ||
| − | |gene_alias=5-LO | + | |gene_alias=5-LO{{!}}5-LOX{{!}}5LPG{{!}}LOG5 |
|gene_description=arachidonate 5-lipoxygenase | |gene_description=arachidonate 5-lipoxygenase | ||
|gene_id=240 | |gene_id=240 | ||
| Line 22: | Line 22: | ||
|hgnc_mgi_id=HGNC:435 | |hgnc_mgi_id=HGNC:435 | ||
|nearest_ensembl=ENSG00000012779 | |nearest_ensembl=ENSG00000012779 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001256154 |
|nearest_refseq=NM_000698 | |nearest_refseq=NM_000698 | ||
|nearest_unigene=Hs.89499 | |nearest_unigene=Hs.89499 | ||
| − | |num_trans= | + | |num_trans=240 |
|species=human | |species=human | ||
|start=45374167 | |start=45374167 | ||
|start_of_center_position=45374183 | |start_of_center_position=45374183 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000542434.5 | + | |transcript_name=ENST00000542434.5 AB208946 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104787.1 | |tss_id=hg_104787.1 | ||
Latest revision as of 19:17, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 45374183 |
|---|---|
| End of the center position in the TSS region: | 45374184 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000542434.5 AB208946 |
|---|---|
| Distance: | 0 |
| Num_trans: | 240 |
| All_trans: | HGNC:435 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_001256154 |
| Entrez ID: | 240 |
| Nearest Unigene: | Hs.89499 |
| Nearest Refseq: | NM_000698 |
| Nearest Ensembl: | ENSG00000012779 |
| Gene Name: | arachidonate 5-lipoxygenase |
| Gene Alias: | 5-LO|5-LOX|5LPG|LOG5 |
| Gene Description: | arachidonate 5-lipoxygenase |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.80597 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
