Difference between revisions of "TSS:Hg 104794.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 2: | Line 2: | ||
|FAM21C= | |FAM21C= | ||
|VPEF= | |VPEF= | ||
| − | |all_trans= | + | |all_trans=HGNC:23414 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-5 |
|end=45727290 | |end=45727290 | ||
|end_of_center_position=45727262 | |end_of_center_position=45727262 | ||
|entrez_id=253725 | |entrez_id=253725 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=FAM21A | + | |gene_alias=FAM21A{{!}}FAM21C{{!}}VPEF |
|gene_description=WASH complex subunit 2C | |gene_description=WASH complex subunit 2C | ||
|gene_id=253725 | |gene_id=253725 | ||
| − | |gene_name= | + | |gene_name=WASH complex subunit 2C |
|gene_source=HGNC:23414 | |gene_source=HGNC:23414 | ||
| − | |gene_symbol= | + | |gene_symbol=WASHC2C |
|gene_synonyms=Em:AC012044.3 KIAA0592 | |gene_synonyms=Em:AC012044.3 KIAA0592 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:23414 | |hgnc_mgi_id=HGNC:23414 | ||
|nearest_ensembl=ENSG00000172661 | |nearest_ensembl=ENSG00000172661 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001367398 |
|nearest_refseq=NM_015262 | |nearest_refseq=NM_015262 | ||
|nearest_unigene=Hs.365286 | |nearest_unigene=Hs.365286 | ||
| − | |num_trans= | + | |num_trans=253725 |
|species=human | |species=human | ||
|start=45727232 | |start=45727232 | ||
|start_of_center_position=45727261 | |start_of_center_position=45727261 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000336378.8 ENST00000623400. | + | |transcript_name=ENST00000540872.6 ENST00000537517.6 ENST00000336378.8 ENST00000623400.4 ENST00000420848.3 AK303048 AK293929 BC053887 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_104794.1 | |tss_id=hg_104794.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A096LPC5 A0A0A0MR88 A0A0A0MT65 B4DF48 | + | |uniprot_id=A0A096LPC5 A0A0A0MR88 A0A0A0MT65 B4DF48 Q9Y4E1 |
}} | }} | ||
Latest revision as of 19:17, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 45727261 |
|---|---|
| End of the center position in the TSS region: | 45727262 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000540872.6 ENST00000537517.6 ENST00000336378.8 ENST00000623400.4 ENST00000420848.3 AK303048 AK293929 BC053887 |
|---|---|
| Distance: | 0 |
| Num_trans: | 253725 |
| All_trans: | HGNC:23414 |
TATA-Box annotation
| Distance to TSS: | -5 |
|---|---|
| Nearest PromoterID: | NM_001367398 |
| Entrez ID: | 253725 |
| Nearest Unigene: | Hs.365286 |
| Nearest Refseq: | NM_015262 |
| Nearest Ensembl: | ENSG00000172661 |
| Gene Name: | WASH complex subunit 2C |
| Gene Alias: | FAM21A|FAM21C|VPEF |
| Gene Description: | WASH complex subunit 2C |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
