Difference between revisions of "TSS:Hg 104806.1"
From referenceTSS
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| Line 3: | Line 3: | ||
|FAM25C= | |FAM25C= | ||
|FAM25G= | |FAM25G= | ||
| − | |all_trans=NR_104039 | + | |all_trans=NR_104039:5 ENST00000623997.3:31 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| Line 9: | Line 9: | ||
|distance_to_tss=-6 | |distance_to_tss=-6 | ||
|end=46369082 | |end=46369082 | ||
| + | |end_of_center_position=46369082 | ||
|entrez_id=100132929 | |entrez_id=100132929 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
| − | |gene_alias=FAM25A | + | |gene_alias=FAM25A{{!}}FAM25B{{!}}FAM25C{{!}}FAM25G |
|gene_description=protein FAM25 | |gene_description=protein FAM25 | ||
|gene_id=100132929 | |gene_id=100132929 | ||
| − | |gene_name= | + | |gene_name=family with sequence similarity 25 member B, pseudogene |
|gene_source=HGNC:23584 | |gene_source=HGNC:23584 | ||
|gene_symbol=FAM25BP | |gene_symbol=FAM25BP | ||
| Line 24: | Line 25: | ||
|nearest_refseq=NM_001137556 | |nearest_refseq=NM_001137556 | ||
|nearest_unigene=Hs.645212 | |nearest_unigene=Hs.645212 | ||
| − | |num_trans= | + | |num_trans=2 |
|species=human | |species=human | ||
|start=46369080 | |start=46369080 | ||
| + | |start_of_center_position=46369081 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-31(AGCTATAAAAGC,-,0.00) |
| − | |transcript_name=NR_104039 | + | |transcript_name=NR_104039.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_104806.1 | |tss_id=hg_104806.1 | ||
Latest revision as of 19:17, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 46369081 |
|---|---|
| End of the center position in the TSS region: | 46369082 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_104039.1 |
|---|---|
| Distance: | 5 |
| Num_trans: | 2 |
| All_trans: | NR_104039:5 ENST00000623997.3:31 |
TATA-Box annotation
| Distance to TSS: | -6 |
|---|---|
| Nearest PromoterID: | NR_104039 |
| Entrez ID: | 100132929 |
| Nearest Unigene: | Hs.645212 |
| Nearest Refseq: | NM_001137556 |
| Nearest Ensembl: | |
| Gene Name: | family with sequence similarity 25 member B, pseudogene |
| Gene Alias: | FAM25A|FAM25B|FAM25C|FAM25G |
| Gene Description: | protein FAM25 |
| Gene Type: | pseudo |
| CpG%: | 0.02 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -31(AGCTATAAAAGC,-,0.00) |
