Difference between revisions of "TSS:Hg 105025.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:29378 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=59079 | |distance_to_tss=59079 | ||
|end=59236557 | |end=59236557 | ||
| + | |end_of_center_position=59236546 | ||
|entrez_id=84457 | |entrez_id=84457 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_032439 | |nearest_refseq=NM_032439 | ||
|nearest_unigene=Hs.499704 | |nearest_unigene=Hs.499704 | ||
| − | |num_trans= | + | |num_trans=84457 |
|species=human | |species=human | ||
|start=59236534 | |start=59236534 | ||
| + | |start_of_center_position=59236545 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-3(TGGTTTTTAAGC,-,0.00),-1(GTTTTTAAGCCC,+,0.00) |
| − | |transcript_name=ENST00000472199 | + | |transcript_name=ENST00000472199.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105025.1 | |tss_id=hg_105025.1 | ||
Latest revision as of 19:22, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 59236545 |
|---|---|
| End of the center position in the TSS region: | 59236546 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000472199.1 |
|---|---|
| Distance: | -8 |
| Num_trans: | 84457 |
| All_trans: | HGNC:29378 |
TATA-Box annotation
| Distance to TSS: | 59079 |
|---|---|
| Nearest PromoterID: | NM_001143774 |
| Entrez ID: | 84457 |
| Nearest Unigene: | Hs.499704 |
| Nearest Refseq: | NM_032439 |
| Nearest Ensembl: | ENSG00000165443 |
| Gene Name: | phytanoyl-CoA 2-hydroxylase interacting protein like |
| Gene Alias: | - |
| Gene Description: | phytanoyl-CoA 2-hydroxylase interacting protein like |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -3(TGGTTTTTAAGC,-,0.00),-1(GTTTTTAAGCCC,+,0.00) |
