Difference between revisions of "TSS:Hg 10506.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:5249 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| Line 19: | Line 19: | ||
|hgnc_mgi_id=HGNC:5249 | |hgnc_mgi_id=HGNC:5249 | ||
|nearest_ensembl=ENSG00000173641 | |nearest_ensembl=ENSG00000173641 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001349688 |
|nearest_refseq=NM_014424 | |nearest_refseq=NM_014424 | ||
|nearest_unigene=Hs.502612 | |nearest_unigene=Hs.502612 | ||
| − | |num_trans= | + | |num_trans=27129 |
|species=human | |species=human | ||
|start=16017399 | |start=16017399 | ||
|start_of_center_position=16017409 | |start_of_center_position=16017409 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-8(CCTCATATACAC,+,0.00),35(CCCCAGAAAAGG,-,0.00) |
| − | |transcript_name=ENST00000463576.5 | + | |transcript_name=ENST00000463576.5 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_10506.1 | |tss_id=hg_10506.1 | ||
Latest revision as of 19:23, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 16017409 |
|---|---|
| End of the center position in the TSS region: | 16017410 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000463576.5 |
|---|---|
| Distance: | -406 |
| Num_trans: | 27129 |
| All_trans: | HGNC:5249 |
TATA-Box annotation
| Distance to TSS: | 1381 |
|---|---|
| Nearest PromoterID: | NM_001349688 |
| Entrez ID: | 27129 |
| Nearest Unigene: | Hs.502612 |
| Nearest Refseq: | NM_014424 |
| Nearest Ensembl: | ENSG00000173641 |
| Gene Name: | heat shock protein family B (small) member 7 |
| Gene Alias: | cvHSP |
| Gene Description: | heat shock protein family B (small) member 7 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -8(CCTCATATACAC,+,0.00),35(CCCCAGAAAAGG,-,0.00) |
