Difference between revisions of "TSS:Hg 105090.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=124 |entrez_id=84159 |gc_percent=0.577114 |gene_alias=DESRT|MRF-2|MRF2 |gene_description=AT-rich interaction domain 5B |gene_nam...") |
|||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |MRF-2= | ||
| + | |MRF2= | ||
| + | |all_trans=NM_001244638:19 BC066345:-89 ENST00000309334.5:-121 BC015120:-121 AK024803:128 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance_to_tss= | + | |distance=19 |
| + | |distance_to_tss=-22 | ||
| + | |end=62049338 | ||
| + | |end_of_center_position=62049335 | ||
|entrez_id=84159 | |entrez_id=84159 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
| − | |gene_alias=DESRT | + | |gene_alias=DESRT{{!}}MRF-2{{!}}MRF2 |
|gene_description=AT-rich interaction domain 5B | |gene_description=AT-rich interaction domain 5B | ||
| − | |gene_name=ARID5B | + | |gene_id=84159 |
| + | |gene_name=AT-rich interaction domain 5B | ||
| + | |gene_source=HGNC:17362 | ||
| + | |gene_symbol=ARID5B | ||
| + | |gene_synonyms=FLJ21150 MRF2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17362 | ||
|nearest_ensembl=ENSG00000150347 | |nearest_ensembl=ENSG00000150347 | ||
|nearest_promoter_id=NM_001244638 | |nearest_promoter_id=NM_001244638 | ||
|nearest_refseq=NM_032199 | |nearest_refseq=NM_032199 | ||
|nearest_unigene=Hs.535297 | |nearest_unigene=Hs.535297 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=62049331 | ||
| + | |start_of_center_position=62049334 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_001244638.2 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105090.1 | |tss_id=hg_105090.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q14865 | ||
}} | }} | ||
Latest revision as of 19:23, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 62049334 |
|---|---|
| End of the center position in the TSS region: | 62049335 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001244638.2 |
|---|---|
| Distance: | 19 |
| Num_trans: | 5 |
| All_trans: | NM_001244638:19 BC066345:-89 ENST00000309334.5:-121 BC015120:-121 AK024803:128 |
TATA-Box annotation
| Distance to TSS: | -22 |
|---|---|
| Nearest PromoterID: | NM_001244638 |
| Entrez ID: | 84159 |
| Nearest Unigene: | Hs.535297 |
| Nearest Refseq: | NM_032199 |
| Nearest Ensembl: | ENSG00000150347 |
| Gene Name: | AT-rich interaction domain 5B |
| Gene Alias: | DESRT|MRF-2|MRF2 |
| Gene Description: | AT-rich interaction domain 5B |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
