Difference between revisions of "TSS:Hg 105114.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:18194 |
|bA531F24.1= | |bA531F24.1= | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=-3 | |distance=-3 | ||
| − | |distance_to_tss= | + | |distance_to_tss=9676 |
|end=62259177 | |end=62259177 | ||
|end_of_center_position=62259169 | |end_of_center_position=62259169 | ||
|entrez_id=219790 | |entrez_id=219790 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
| − | |gene_alias=PLEKHK1 | + | |gene_alias=PLEKHK1{{!}}bA531F24.1 |
|gene_description=rhotekin 2 | |gene_description=rhotekin 2 | ||
|gene_id=22891 | |gene_id=22891 | ||
| Line 16: | Line 16: | ||
|gene_source=HGNC:18194 | |gene_source=HGNC:18194 | ||
|gene_symbol=ZNF365 | |gene_symbol=ZNF365 | ||
| − | |gene_synonyms=KIAA0844 UAN | + | |gene_synonyms=KIAA0844 Su48 UAN |
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:18194 | |hgnc_mgi_id=HGNC:18194 | ||
|nearest_ensembl=ENSG00000182010 | |nearest_ensembl=ENSG00000182010 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001282941 |
|nearest_refseq=NM_145307 | |nearest_refseq=NM_145307 | ||
|nearest_unigene=Hs.58559 | |nearest_unigene=Hs.58559 | ||
| − | |num_trans= | + | |num_trans=22891 |
|species=human | |species=human | ||
|start=62259159 | |start=62259159 | ||
|start_of_center_position=62259168 | |start_of_center_position=62259168 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-35(GGTTTTATAAAG,-,0.00),-33(TTTTATAAAGGG,+,0.00) |
|transcript_name=BX647853 BX647904 | |transcript_name=BX647853 BX647904 | ||
|tss_classification=no | |tss_classification=no | ||
Latest revision as of 19:24, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 62259168 |
|---|---|
| End of the center position in the TSS region: | 62259169 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BX647853 BX647904 |
|---|---|
| Distance: | -3 |
| Num_trans: | 22891 |
| All_trans: | HGNC:18194 |
TATA-Box annotation
| Distance to TSS: | 9676 |
|---|---|
| Nearest PromoterID: | NM_001282941 |
| Entrez ID: | 219790 |
| Nearest Unigene: | Hs.58559 |
| Nearest Refseq: | NM_145307 |
| Nearest Ensembl: | ENSG00000182010 |
| Gene Name: | zinc finger protein 365 |
| Gene Alias: | PLEKHK1|bA531F24.1 |
| Gene Description: | rhotekin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GGTTTTATAAAG,-,0.00),-33(TTTTATAAAGGG,+,0.00) |
