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Difference between revisions of "TSS:Hg 105259.1"

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{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000630771.2:49 NM_001282960:49 NM_001282959:49 NM_018237:49 NR_104262:49 uc001jol.3:49 ENST00000536391.5:-61 uc057trn.1:-61 ENST00000265872.10:119 uc001joo.5:119 AK023438:119 AF465616:119 ENST00000538031.5:121 uc057tro.1:121 AK307550:130 ENST00000543719.5:131 uc010qja.3:131 AK298004:131 ENST00000541012.5:132 uc057trp.1:132 BC058846:134 AK001701:141 AY249140:141 ENST00000543229.5:144 ENST00000539539.5:144 uc057trq.1:144 uc057trr.1:144 AK292649:144 AK307704:144 AK122871:144 AK299307:144 ENST00000543225.5:147 ENST00000536012.5:147 uc057trs.1:147 uc057trt.1:147 AK307671:147 BX647943:147 ENST00000494903.2:157 uc057tru.1:157 ENST00000540210.5:160 uc057trv.1:160 BC130626:160 BC132725:160 BC144118:160 BC108682:171
+
|all_trans=HGNC:24236
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.08
 
|cpg_percent=0.08
 
|distance=49
 
|distance=49
−
|distance_to_tss=-60
+
|distance_to_tss=-155
 
|end=68721095
 
|end=68721095
 
|end_of_center_position=68721084
 
|end_of_center_position=68721084
Line 19: Line 19:
 
|hgnc_mgi_id=HGNC:24236
 
|hgnc_mgi_id=HGNC:24236
 
|nearest_ensembl=ENSG00000060339
 
|nearest_ensembl=ENSG00000060339
−
|nearest_promoter_id=NM_001282960
+
|nearest_promoter_id=NM_018237
 
|nearest_refseq=NM_018237
 
|nearest_refseq=NM_018237
 
|nearest_unigene=Hs.49853
 
|nearest_unigene=Hs.49853
−
|num_trans=45
+
|num_trans=55749
 
|species=human
 
|species=human
 
|start=68721072
 
|start=68721072
 
|start_of_center_position=68721083
 
|start_of_center_position=68721083
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000630771.2 NM_001282960 NM_001282959 NM_018237 NR_104262 uc001jol.3
+
|transcript_name=ENST00000630771.2
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_105259.1
 
|tss_id=hg_105259.1
 
|tss_score=1
 
|tss_score=1
−
|uniprot_id=F5H3E1 Q8IX12
+
|uniprot_id=F5H3E1
 
}}
 
}}

Latest revision as of 19:27, 19 July 2021

Basic information about the TSS

TSS ID:hg_105259.1
Species:human
Chr:chr10
TSS Classification:yes
Start:68721072
End:68721095
Strand:+
TSS Score:1
Start of the center position in the TSS region:68721083
End of the center position in the TSS region:68721084



Gene and protein annotation

Transcript_name:ENST00000630771.2
Distance:49
GeneID:55749
HGNC/MGI_ID:HGNC:24236
UniProt_ID:F5H3E1
Gene_name:cell division cycle and apoptosis regulator 1
Gene_symbol:CCAR1
Gene_synonyms:CARP-1 CARP1 FLJ10590
Gene_source:HGNC:24236



Transcript annotation

Transcript_name:ENST00000630771.2
Distance:49
Num_trans:55749
All_trans:HGNC:24236



TATA-Box annotation

Distance to TSS:-155
Nearest PromoterID:NM_018237
Entrez ID:55749
Nearest Unigene:Hs.49853
Nearest Refseq:NM_018237
Nearest Ensembl:ENSG00000060339
Gene Name:cell division cycle and apoptosis regulator 1
Gene Alias:-
Gene Description:cell division cycle and apoptosis regulator 1
Gene Type:protein-coding
CpG%:0.08
GC%:0.587065
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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