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Difference between revisions of "TSS:Hg 105261.1"

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{{TSSDetail
 
{{TSSDetail
−
|all_trans=BC108682:-237 ENST00000540210.5:-248 uc057trv.1:-248 BC130626:-248 BC132725:-248 BC144118:-248 ENST00000494903.2:-251 uc057tru.1:-251 ENST00000543225.5:-261 ENST00000536012.5:-261 uc057trs.1:-261 uc057trt.1:-261 AK307671:-261 BX647943:-261 ENST00000543229.5:-264 ENST00000539539.5:-264 uc057trq.1:-264 uc057trr.1:-264 AK292649:-264 AK307704:-264 AK122871:-264 AK299307:-264 AK001701:-267 AY249140:-267 BC058846:-274 ENST00000541012.5:-276 uc057trp.1:-276 ENST00000543719.5:-277 uc010qja.3:-277 AK298004:-277 AK307550:-278 ENST00000538031.5:-287 uc057tro.1:-287 ENST00000265872.10:-289 uc001joo.5:-289 AK023438:-289 AF465616:-289 ENST00000630771.2:-359 NM_001282960:-359 NM_001282959:-359 NM_018237:-359 NR_104262:-359 uc001jol.3:-359 ENST00000536391.5:-491 uc057trn.1:-491
+
|all_trans=HGNC:24236
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.11
 
|cpg_percent=0.11
 
|distance=-237
 
|distance=-237
−
|distance_to_tss=375
+
|distance_to_tss=280
 
|end=68721535
 
|end=68721535
 +
|end_of_center_position=68721519
 
|entrez_id=55749
 
|entrez_id=55749
 
|gc_percent=0.751244
 
|gc_percent=0.751244
Line 18: Line 19:
 
|hgnc_mgi_id=HGNC:24236
 
|hgnc_mgi_id=HGNC:24236
 
|nearest_ensembl=ENSG00000060339
 
|nearest_ensembl=ENSG00000060339
−
|nearest_promoter_id=NM_018237
+
|nearest_promoter_id=NM_001282960
 
|nearest_refseq=NM_018237
 
|nearest_refseq=NM_018237
 
|nearest_unigene=Hs.49853
 
|nearest_unigene=Hs.49853
−
|num_trans=45
+
|num_trans=55749
 
|species=human
 
|species=human
 
|start=68721502
 
|start=68721502
 +
|start_of_center_position=68721518
 
|strand=+
 
|strand=+
 
|transcript_name=BC108682
 
|transcript_name=BC108682

Latest revision as of 19:27, 19 July 2021

Basic information about the TSS

TSS ID:hg_105261.1
Species:human
Chr:chr10
TSS Classification:yes
Start:68721502
End:68721535
Strand:+
TSS Score:1
Start of the center position in the TSS region:68721518
End of the center position in the TSS region:68721519



Gene and protein annotation

Transcript_name:BC108682
Distance:-237
GeneID:55749
HGNC/MGI_ID:HGNC:24236
UniProt_ID:
Gene_name:cell division cycle and apoptosis regulator 1
Gene_symbol:CCAR1
Gene_synonyms:CARP-1 CARP1 FLJ10590
Gene_source:HGNC:24236



Transcript annotation

Transcript_name:BC108682
Distance:-237
Num_trans:55749
All_trans:HGNC:24236



TATA-Box annotation

Distance to TSS:280
Nearest PromoterID:NM_001282960
Entrez ID:55749
Nearest Unigene:Hs.49853
Nearest Refseq:NM_018237
Nearest Ensembl:ENSG00000060339
Gene Name:cell division cycle and apoptosis regulator 1
Gene Alias:-
Gene Description:cell division cycle and apoptosis regulator 1
Gene Type:protein-coding
CpG%:0.11
GC%:0.751244
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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