Difference between revisions of "TSS:Hg 10533.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:28127 |
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=3 |
|end=16237214 | |end=16237214 | ||
| + | |end_of_center_position=16237181 | ||
|entrez_id=79363 | |entrez_id=79363 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
| − | |gene_alias=C1orf89 | + | |gene_alias=C1orf89{{!}}RSG1 |
| − | |gene_description= | + | |gene_description=ciliogenesis and planar polarity effector 2 |
|gene_id=79363 | |gene_id=79363 | ||
| − | |gene_name= | + | |gene_name=ciliogenesis and planar polarity effector 2 |
|gene_source=HGNC:28127 | |gene_source=HGNC:28127 | ||
| − | |gene_symbol= | + | |gene_symbol=CPLANE2 |
|gene_synonyms=MGC10731 | |gene_synonyms=MGC10731 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| Line 21: | Line 22: | ||
|nearest_refseq=NM_030907 | |nearest_refseq=NM_030907 | ||
|nearest_unigene=Hs.546430 | |nearest_unigene=Hs.546430 | ||
| − | |num_trans= | + | |num_trans=79363 |
|species=human | |species=human | ||
|start=16237146 | |start=16237146 | ||
| + | |start_of_center_position=16237180 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=76(GGCGTTTAAAGG,-,0.00),77(GCGTTTAAAGGG,-,0.00) |
| − | |transcript_name=ENST00000375599. | + | |transcript_name=ENST00000375599.8 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_10533.1 | |tss_id=hg_10533.1 | ||
Latest revision as of 19:28, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 16237180 |
|---|---|
| End of the center position in the TSS region: | 16237181 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000375599.8 |
|---|---|
| Distance: | 0 |
| Num_trans: | 79363 |
| All_trans: | HGNC:28127 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_030907 |
| Entrez ID: | 79363 |
| Nearest Unigene: | Hs.546430 |
| Nearest Refseq: | NM_030907 |
| Nearest Ensembl: | ENSG00000132881 |
| Gene Name: | ciliogenesis and planar polarity effector 2 |
| Gene Alias: | C1orf89|RSG1 |
| Gene Description: | ciliogenesis and planar polarity effector 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 76(GGCGTTTAAAGG,-,0.00),77(GCGTTTAAAGGG,-,0.00) |
