Difference between revisions of "TSS:Hg 105423.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| + | |USH1D= | ||
| + | |all_trans=HGNC:13733 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=0 | ||
|distance_to_tss=-1 | |distance_to_tss=-1 | ||
| + | |end=71396959 | ||
| + | |end_of_center_position=71396934 | ||
|entrez_id=64072 | |entrez_id=64072 | ||
|gc_percent=0.761194 | |gc_percent=0.761194 | ||
| − | |gene_alias=CDHR23 | + | |gene_alias=CDHR23{{!}}PITA5{{!}}USH1D |
|gene_description=cadherin related 23 | |gene_description=cadherin related 23 | ||
| − | |gene_name=CDH23 | + | |gene_id=64072 |
| + | |gene_name=cadherin related 23 | ||
| + | |gene_source=HGNC:13733 | ||
| + | |gene_symbol=CDH23 | ||
| + | |gene_synonyms=CDHR23 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:13733 | ||
|nearest_ensembl=ENSG00000107736 | |nearest_ensembl=ENSG00000107736 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001171932 |
|nearest_refseq=NM_022124 | |nearest_refseq=NM_022124 | ||
|nearest_unigene=Hs.656032 | |nearest_unigene=Hs.656032 | ||
| + | |num_trans=64072 | ||
| + | |species=human | ||
| + | |start=71396907 | ||
| + | |start_of_center_position=71396933 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000224721.12 ENST00000398809.9 ENST00000461841.7 ENST00000299366.11 ENST00000644511.1 BC011570 BC032581 BC139903 BC108254 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105423.1 | |tss_id=hg_105423.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0A0MS94 A0A2R8YEM1 A5D6V9 Q32P55 Q8N5B3 Q9H251 | ||
}} | }} | ||
Latest revision as of 19:31, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 71396933 |
|---|---|
| End of the center position in the TSS region: | 71396934 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000224721.12 ENST00000398809.9 ENST00000461841.7 ENST00000299366.11 ENST00000644511.1 BC011570 BC032581 BC139903 BC108254 |
|---|---|
| Distance: | 0 |
| Num_trans: | 64072 |
| All_trans: | HGNC:13733 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_001171932 |
| Entrez ID: | 64072 |
| Nearest Unigene: | Hs.656032 |
| Nearest Refseq: | NM_022124 |
| Nearest Ensembl: | ENSG00000107736 |
| Gene Name: | cadherin related 23 |
| Gene Alias: | CDHR23|PITA5|USH1D |
| Gene Description: | cadherin related 23 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.761194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
