Difference between revisions of "TSS:Hg 105844.1"
From referenceTSS
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000372270.6 | + | |all_trans=NR_138551:0 ENST00000372270.6:5 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=8 |
|end=80131677 | |end=80131677 | ||
|end_of_center_position=80131669 | |end_of_center_position=80131669 | ||
| Line 10: | Line 10: | ||
|gc_percent=0.437811 | |gc_percent=0.437811 | ||
|gene_alias=- | |gene_alias=- | ||
| − | |gene_description=placenta | + | |gene_description=placenta associated 9 |
|gene_id=219348 | |gene_id=219348 | ||
| − | |gene_name=placenta | + | |gene_name=placenta associated 9 |
|gene_source=HGNC:19255 | |gene_source=HGNC:19255 | ||
|gene_symbol=PLAC9 | |gene_symbol=PLAC9 | ||
| Line 27: | Line 27: | ||
|start_of_center_position=80131668 | |start_of_center_position=80131668 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-41(GGCTTTTAAAAG,-,0.00),-40(GCTTTTAAAAGA,+,0.00),-40(GCTTTTAAAAGA,-,0.00),-39(CTTTTAAAAGAT,+,0.00) |
| − | |transcript_name= | + | |transcript_name=NR_138551.2 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105844.1 | |tss_id=hg_105844.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 19:39, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 80131668 |
|---|---|
| End of the center position in the TSS region: | 80131669 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NR_138551.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 2 |
| All_trans: | NR_138551:0 ENST00000372270.6:5 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NR_138551 |
| Entrez ID: | 219348 |
| Nearest Unigene: | Hs.204947 |
| Nearest Refseq: | NM_001012973 |
| Nearest Ensembl: | ENSG00000189129 |
| Gene Name: | placenta associated 9 |
| Gene Alias: | - |
| Gene Description: | placenta associated 9 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.437811 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -41(GGCTTTTAAAAG,-,0.00),-40(GCTTTTAAAAGA,+,0.00),-40(GCTTTTAAAAGA,-,0.00),-39(CTTTTAAAAGAT,+,0.00) |
