Difference between revisions of "TSS:Hg 105939.1"
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:9990 | ||
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| − | |distance= | + | |distance=95 |
|distance_to_tss=-4959 | |distance_to_tss=-4959 | ||
|end=84230571 | |end=84230571 | ||
| Line 9: | Line 10: | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
|gene_alias=LRRC22 | |gene_alias=LRRC22 | ||
| − | |gene_description= | + | |gene_description=leucine rich repeat, Ig-like and transmembrane domains 2 |
| − | |gene_name= | + | |gene_id=5995 |
| + | |gene_name=retinal G protein coupled receptor | ||
| + | |gene_source=HGNC:9990 | ||
| + | |gene_symbol=RGR | ||
| + | |gene_synonyms=RP44 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9990 | ||
|nearest_ensembl=ENSG00000204033 | |nearest_ensembl=ENSG00000204033 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001284223 |
|nearest_refseq=NM_001017924 | |nearest_refseq=NM_001017924 | ||
|nearest_unigene=Hs.450425 | |nearest_unigene=Hs.450425 | ||
| − | |num_trans= | + | |num_trans=5995 |
|species=human | |species=human | ||
|start=84230525 | |start=84230525 | ||
|start_of_center_position=84230548 | |start_of_center_position=84230548 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=80(GGCTTTATAAAT,-,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000652073.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105939.1 | |tss_id=hg_105939.1 | ||
|tss_score=1 | |tss_score=1 | ||
| + | |uniprot_id=A0A494C063 | ||
}} | }} | ||
Latest revision as of 19:42, 19 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 84230548 |
|---|---|
| End of the center position in the TSS region: | 84230549 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000652073.1 |
|---|---|
| Distance: | 95 |
| Num_trans: | 5995 |
| All_trans: | HGNC:9990 |
TATA-Box annotation
| Distance to TSS: | -4959 |
|---|---|
| Nearest PromoterID: | NM_001284223 |
| Entrez ID: | 340745 |
| Nearest Unigene: | Hs.450425 |
| Nearest Refseq: | NM_001017924 |
| Nearest Ensembl: | ENSG00000204033 |
| Gene Name: | retinal G protein coupled receptor |
| Gene Alias: | LRRC22 |
| Gene Description: | leucine rich repeat, Ig-like and transmembrane domains 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 80(GGCTTTATAAAT,-,0.00) |
