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Difference between revisions of "TSS:Hg 105942.1"

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{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000469446.5:0 ENST00000358110.7:0 ENST00000478727.6:0 ENST00000651237.1:0 ENST00000650774.1:0 ENST00000652122.1:0 ENST00000652092.2:0 NM_001012722:0 NM_001012720:0 NM_002921:0 BX641033:0 U14910:0 ENST00000483660.5:4 ENST00000650682.1:-9 ENST00000359452.9:20 BC011349:20 ENST00000372092.3:27 BC008094:27 BC042536:28 ENST00000483771.5:30 BC027987:30 ENST00000483744.6:32 KJ905896:32 CU675929:32 KU178307:32 KU178308:32 DQ892074:32 DQ895267:32 KJ897466:32 KR709673:32 KR709674:32 KR709675:32 ENST00000651155.1:-112 ENST00000652310.1:-115
+
|all_trans=HGNC:9990
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.015
 
|cpg_percent=0.015
Line 22: Line 22:
 
|nearest_refseq=NM_002921
 
|nearest_refseq=NM_002921
 
|nearest_unigene=Hs.1544
 
|nearest_unigene=Hs.1544
−
|num_trans=34
+
|num_trans=5995
 
|species=human
 
|species=human
 
|start=84245046
 
|start=84245046
Line 28: Line 28:
 
|strand=+
 
|strand=+
 
|tata_box=-35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGG,+,0.00)
 
|tata_box=-35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGG,+,0.00)
−
|transcript_name=ENST00000469446.5 ENST00000358110.7 ENST00000478727.6 ENST00000651237.1 ENST00000650774.1 ENST00000652122.1 ENST00000652092.2 NM_001012722 NM_001012720 NM_002921 BX641033 U14910
+
|transcript_name=ENST00000469446.5 ENST00000358110.7 ENST00000478727.6 ENST00000651237.1 ENST00000650774.1 ENST00000652122.1 ENST00000652092.2 BX641033 U14910
 
|tss_classification=no
 
|tss_classification=no
 
|tss_id=hg_105942.1
 
|tss_id=hg_105942.1

Latest revision as of 19:42, 19 July 2021

Basic information about the TSS

TSS ID:hg_105942.1
Species:human
Chr:chr10
TSS Classification:no
Start:84245046
End:84245059
Strand:+
TSS Score:1
Start of the center position in the TSS region:84245052
End of the center position in the TSS region:84245053



Gene and protein annotation

Transcript_name:ENST00000469446.5 ENST00000358110.7 ENST00000478727.6 ENST00000651237.1 ENST00000650774.1 ENST00000652122.1 ENST00000652092.2 BX641033 U14910
Distance:0
GeneID:5995
HGNC/MGI_ID:HGNC:9990
UniProt_ID:A0A0S2Z494 A0A494C063 A0A494C170 A0A494C187 A0A494C1A1 P47804
Gene_name:retinal G protein coupled receptor
Gene_symbol:RGR
Gene_synonyms:RP44
Gene_source:HGNC:9990



Transcript annotation

Transcript_name:ENST00000469446.5 ENST00000358110.7 ENST00000478727.6 ENST00000651237.1 ENST00000650774.1 ENST00000652122.1 ENST00000652092.2 BX641033 U14910
Distance:0
Num_trans:5995
All_trans:HGNC:9990



TATA-Box annotation

Distance to TSS:0
Nearest PromoterID:NM_002921
Entrez ID:5995
Nearest Unigene:Hs.1544
Nearest Refseq:NM_002921
Nearest Ensembl:ENSG00000148604
Gene Name:retinal G protein coupled receptor
Gene Alias:RP44
Gene Description:retinal G protein coupled receptor
Gene Type:protein-coding
CpG%:0.015
GC%:0.606965
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):-35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGG,+,0.00)
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