Difference between revisions of "TSS:Hg 105942.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:9990 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 6: | Line 6: | ||
|distance_to_tss=0 | |distance_to_tss=0 | ||
|end=84245059 | |end=84245059 | ||
| + | |end_of_center_position=84245053 | ||
|entrez_id=5995 | |entrez_id=5995 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
| Line 18: | Line 19: | ||
|hgnc_mgi_id=HGNC:9990 | |hgnc_mgi_id=HGNC:9990 | ||
|nearest_ensembl=ENSG00000148604 | |nearest_ensembl=ENSG00000148604 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_002921 |
|nearest_refseq=NM_002921 | |nearest_refseq=NM_002921 | ||
|nearest_unigene=Hs.1544 | |nearest_unigene=Hs.1544 | ||
| − | |num_trans= | + | |num_trans=5995 |
|species=human | |species=human | ||
|start=84245046 | |start=84245046 | ||
| + | |start_of_center_position=84245052 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGG,+,0.00) |
| − | |transcript_name=ENST00000469446.5 ENST00000478727 | + | |transcript_name=ENST00000469446.5 ENST00000358110.7 ENST00000478727.6 ENST00000651237.1 ENST00000650774.1 ENST00000652122.1 ENST00000652092.2 BX641033 U14910 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_105942.1 | |tss_id=hg_105942.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=P47804 | + | |uniprot_id=A0A0S2Z494 A0A494C063 A0A494C170 A0A494C187 A0A494C1A1 P47804 |
}} | }} | ||
Latest revision as of 19:42, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 84245052 |
|---|---|
| End of the center position in the TSS region: | 84245053 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000469446.5 ENST00000358110.7 ENST00000478727.6 ENST00000651237.1 ENST00000650774.1 ENST00000652122.1 ENST00000652092.2 BX641033 U14910 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5995 |
| All_trans: | HGNC:9990 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_002921 |
| Entrez ID: | 5995 |
| Nearest Unigene: | Hs.1544 |
| Nearest Refseq: | NM_002921 |
| Nearest Ensembl: | ENSG00000148604 |
| Gene Name: | retinal G protein coupled receptor |
| Gene Alias: | RP44 |
| Gene Description: | retinal G protein coupled receptor |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGG,+,0.00) |
