Difference between revisions of "TSS:Hg 105969.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=-9 |entrez_id=94233 |gc_percent=0.572139 |gene_alias=MOP |gene_description=opsin 4 |gene_name=OPN4 |gene_type=protein-coding |ne...") |
|||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=HGNC:14449 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance_to_tss= | + | |distance=0 |
| + | |distance_to_tss=1 | ||
| + | |end=86654554 | ||
| + | |end_of_center_position=86654548 | ||
|entrez_id=94233 | |entrez_id=94233 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
|gene_alias=MOP | |gene_alias=MOP | ||
|gene_description=opsin 4 | |gene_description=opsin 4 | ||
| − | |gene_name=OPN4 | + | |gene_id=94233 |
| + | |gene_name=opsin 4 | ||
| + | |gene_source=HGNC:14449 | ||
| + | |gene_symbol=OPN4 | ||
| + | |gene_synonyms=MOP melanopsin | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14449 | ||
|nearest_ensembl=ENSG00000122375 | |nearest_ensembl=ENSG00000122375 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_033282 |
|nearest_refseq=NM_033282 | |nearest_refseq=NM_033282 | ||
|nearest_unigene=Hs.283922 | |nearest_unigene=Hs.283922 | ||
| − | |tata_box= | + | |num_trans=94233 |
| + | |species=human | ||
| + | |start=86654541 | ||
| + | |start_of_center_position=86654547 | ||
| + | |strand=+ | ||
| + | |tata_box=-34(CGCTATATAAAG,-,0.00) | ||
| + | |transcript_name=ENST00000241891.10 DQ426884 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105969.1 | |tss_id=hg_105969.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9UHM6 | ||
}} | }} | ||
Latest revision as of 19:42, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 86654547 |
|---|---|
| End of the center position in the TSS region: | 86654548 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000241891.10 DQ426884 |
|---|---|
| Distance: | 0 |
| Num_trans: | 94233 |
| All_trans: | HGNC:14449 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NM_033282 |
| Entrez ID: | 94233 |
| Nearest Unigene: | Hs.283922 |
| Nearest Refseq: | NM_033282 |
| Nearest Ensembl: | ENSG00000122375 |
| Gene Name: | opsin 4 |
| Gene Alias: | MOP |
| Gene Description: | opsin 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CGCTATATAAAG,-,0.00) |
