Difference between revisions of "TSS:Hg 105972.1"
From referenceTSS
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|PDLIM6= | |PDLIM6= | ||
|ZASP= | |ZASP= | ||
| − | |all_trans= | + | |all_trans=HGNC:15710 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| − | |distance= | + | |distance=93 |
| − | |distance_to_tss=- | + | |distance_to_tss=-100 |
|end=86668414 | |end=86668414 | ||
|end_of_center_position=86668412 | |end_of_center_position=86668412 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
| − | |gene_alias=CMD1C | + | |gene_alias=CMD1C{{!}}CMH24{{!}}CMPD3{{!}}CYPHER{{!}}LDB3Z1{{!}}LDB3Z4{{!}}LVNC3{{!}}MFM4{{!}}ORACLE{{!}}PDLIM6{{!}}ZASP |
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
|gene_id=11155 | |gene_id=11155 | ||
| Line 29: | Line 29: | ||
|hgnc_mgi_id=HGNC:15710 | |hgnc_mgi_id=HGNC:15710 | ||
|nearest_ensembl=ENSG00000122367 | |nearest_ensembl=ENSG00000122367 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001080114 |
|nearest_refseq=NM_007078 | |nearest_refseq=NM_007078 | ||
|nearest_unigene=Hs.657271 | |nearest_unigene=Hs.657271 | ||
| − | |num_trans= | + | |num_trans=11155 |
|species=human | |species=human | ||
|start=86668408 | |start=86668408 | ||
|start_of_center_position=86668411 | |start_of_center_position=86668411 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=41(GTCCATTTATGG,-,0.00),43(CCATTTATGGGC,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000623056.4 AK304760 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_105972.1 | |tss_id=hg_105972.1 | ||
Latest revision as of 19:42, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 86668411 |
|---|---|
| End of the center position in the TSS region: | 86668412 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000623056.4 AK304760 |
|---|---|
| Distance: | 93 |
| Num_trans: | 11155 |
| All_trans: | HGNC:15710 |
TATA-Box annotation
| Distance to TSS: | -100 |
|---|---|
| Nearest PromoterID: | NM_001080114 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 41(GTCCATTTATGG,-,0.00),43(CCATTTATGGGC,+,0.00) |
