Difference between revisions of "TSS:Hg 106038.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=194 |entrez_id=5728 |gc_percent=0.691542 |gene_alias=10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|TEP1 |gene_description=phosphat...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BZS= | ||
| + | |CWS1= | ||
| + | |DEC= | ||
| + | |GLM2= | ||
| + | |MHAM= | ||
| + | |MMAC1= | ||
| + | |PTEN1= | ||
| + | |TEP1= | ||
| + | |all_trans=HGNC:9588 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| − | |distance_to_tss= | + | |distance=0 |
| + | |distance_to_tss=7 | ||
| + | |end=87863669 | ||
| + | |end_of_center_position=87863633 | ||
|entrez_id=5728 | |entrez_id=5728 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=10q23del | + | |gene_alias=10q23del{{!}}BZS{{!}}CWS1{{!}}DEC{{!}}GLM2{{!}}MHAM{{!}}MMAC1{{!}}PTEN1{{!}}PTENbeta{{!}}TEP1 |
|gene_description=phosphatase and tensin homolog | |gene_description=phosphatase and tensin homolog | ||
| − | |gene_name=PTEN | + | |gene_id=5728 |
| + | |gene_name=phosphatase and tensin homolog | ||
| + | |gene_source=HGNC:9588 | ||
| + | |gene_symbol=PTEN | ||
| + | |gene_synonyms=MMAC1 PTEN1 TEP1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9588 | ||
|nearest_ensembl=ENSG00000171862 | |nearest_ensembl=ENSG00000171862 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001304718 |
|nearest_refseq=NM_000314 | |nearest_refseq=NM_000314 | ||
|nearest_unigene=Hs.500466 | |nearest_unigene=Hs.500466 | ||
| − | |tata_box= | + | |num_trans=5728 |
| + | |species=human | ||
| + | |start=87863595 | ||
| + | |start_of_center_position=87863632 | ||
| + | |strand=+ | ||
| + | |tata_box=-62(CTCTTTATGCGC,+,0.00) | ||
| + | |transcript_name=ENST00000371953.8 BC005821 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106038.1 | |tss_id=hg_106038.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F6KD01 P60484 | ||
}} | }} | ||
Latest revision as of 19:44, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 87863632 |
|---|---|
| End of the center position in the TSS region: | 87863633 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000371953.8 BC005821 |
|---|---|
| Distance: | 0 |
| Num_trans: | 5728 |
| All_trans: | HGNC:9588 |
TATA-Box annotation
| Distance to TSS: | 7 |
|---|---|
| Nearest PromoterID: | NM_001304718 |
| Entrez ID: | 5728 |
| Nearest Unigene: | Hs.500466 |
| Nearest Refseq: | NM_000314 |
| Nearest Ensembl: | ENSG00000171862 |
| Gene Name: | phosphatase and tensin homolog |
| Gene Alias: | 10q23del|BZS|CWS1|DEC|GLM2|MHAM|MMAC1|PTEN1|PTENbeta|TEP1 |
| Gene Description: | phosphatase and tensin homolog |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -62(CTCTTTATGCGC,+,0.00) |
