Difference between revisions of "TSS:Hg 106619.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=397 |entrez_id=55719 |gc_percent=0.61194 |gene_alias=C10orf6|FAM178A |gene_description=SMC5-SMC6 complex localization factor 2 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FAM178A= | ||
| + | |all_trans=HGNC:17814 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| − | |distance_to_tss= | + | |distance=0 |
| + | |distance_to_tss=3 | ||
| + | |end=100912977 | ||
| + | |end_of_center_position=100912967 | ||
|entrez_id=55719 | |entrez_id=55719 | ||
|gc_percent=0.61194 | |gc_percent=0.61194 | ||
| − | |gene_alias=C10orf6 | + | |gene_alias=C10orf6{{!}}FAM178A |
|gene_description=SMC5-SMC6 complex localization factor 2 | |gene_description=SMC5-SMC6 complex localization factor 2 | ||
| − | |gene_name=SLF2 | + | |gene_id=55719 |
| + | |gene_name=SMC5-SMC6 complex localization factor 2 | ||
| + | |gene_source=HGNC:17814 | ||
| + | |gene_symbol=SLF2 | ||
| + | |gene_synonyms=FLJ10512 FLJ25012 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17814 | ||
|nearest_ensembl=ENSG00000119906 | |nearest_ensembl=ENSG00000119906 | ||
|nearest_promoter_id=NM_001243770 | |nearest_promoter_id=NM_001243770 | ||
|nearest_refseq=NM_018121 | |nearest_refseq=NM_018121 | ||
|nearest_unigene=Hs.447458 | |nearest_unigene=Hs.447458 | ||
| + | |num_trans=55719 | ||
| + | |species=human | ||
| + | |start=100912955 | ||
| + | |start_of_center_position=100912966 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000370271.7 ENST00000649226.1 ENST00000238961.9 AL833126 AL832343 BC015131 BC047715 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_106619.1 | |tss_id=hg_106619.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A3B3IRS8 B1AL16 Q05BG6 Q8IX21 | ||
}} | }} | ||
Latest revision as of 19:57, 19 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 100912966 |
|---|---|
| End of the center position in the TSS region: | 100912967 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000370271.7 ENST00000649226.1 ENST00000238961.9 AL833126 AL832343 BC015131 BC047715 |
|---|---|
| Distance: | 0 |
| Num_trans: | 55719 |
| All_trans: | HGNC:17814 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_001243770 |
| Entrez ID: | 55719 |
| Nearest Unigene: | Hs.447458 |
| Nearest Refseq: | NM_018121 |
| Nearest Ensembl: | ENSG00000119906 |
| Gene Name: | SMC5-SMC6 complex localization factor 2 |
| Gene Alias: | C10orf6|FAM178A |
| Gene Description: | SMC5-SMC6 complex localization factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.61194 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
