Difference between revisions of "TSS:Hg 106749.1"
From referenceTSS
| (2 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|RNF27= | |RNF27= | ||
| − | |all_trans= | + | |all_trans=HGNC:15579 |
|chr=chr10 | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance=- | + | |distance=-11 |
|distance_to_tss=581 | |distance_to_tss=581 | ||
|end=102645133 | |end=102645133 | ||
| + | |end_of_center_position=102645076 | ||
|entrez_id=81603 | |entrez_id=81603 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
| − | |gene_alias=GERP | + | |gene_alias=GERP{{!}}RNF27 |
|gene_description=tripartite motif containing 8 | |gene_description=tripartite motif containing 8 | ||
|gene_id=81603 | |gene_id=81603 | ||
| Line 19: | Line 20: | ||
|hgnc_mgi_id=HGNC:15579 | |hgnc_mgi_id=HGNC:15579 | ||
|nearest_ensembl=ENSG00000171206 | |nearest_ensembl=ENSG00000171206 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_144321 |
|nearest_refseq=NM_030912 | |nearest_refseq=NM_030912 | ||
|nearest_unigene=Hs.336810 | |nearest_unigene=Hs.336810 | ||
| − | |num_trans= | + | |num_trans=81603 |
|species=human | |species=human | ||
|start=102645018 | |start=102645018 | ||
| + | |start_of_center_position=102645075 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=ENST00000645961.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_106749.1 | |tss_id=hg_106749.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A2R8Y500 |
}} | }} | ||
Latest revision as of 20:00, 19 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 102645075 |
|---|---|
| End of the center position in the TSS region: | 102645076 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000645961.1 |
|---|---|
| Distance: | -11 |
| Num_trans: | 81603 |
| All_trans: | HGNC:15579 |
TATA-Box annotation
| Distance to TSS: | 581 |
|---|---|
| Nearest PromoterID: | NR_144321 |
| Entrez ID: | 81603 |
| Nearest Unigene: | Hs.336810 |
| Nearest Refseq: | NM_030912 |
| Nearest Ensembl: | ENSG00000171206 |
| Gene Name: | tripartite motif containing 8 |
| Gene Alias: | GERP|RNF27 |
| Gene Description: | tripartite motif containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
