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Difference between revisions of "TSS:Hg 109451.1"

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{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000618427.4:0 ENST00000618804.5:0 ENST00000614220.4:0 ENST00000621119.4:0 ENST00000622363.4:0 ENST00000611933.4:0 ENST00000435852.6:0 ENST00000619059.4:0 NM_001001971:0 NM_001166698:0 NM_001347850:0 NM_198215:0 NM_001347851:0 NM_001347852:0 NM_001347849:0 AK316542:0 BC036453:0 BC064431:0 AK289796:0 AK294805:0 ENST00000422313.6:43 KJ895852:43 KJ900467:43 DQ894404:43 EU176262:43 CU687880:43 ENST00000470220.5:-101 ENST00000503444.1:-230 ENST00000468840.6:-303 NM_001347847:-303 NM_001347845:-303 NM_001347844:-303 NM_001347843:-303 NM_001347848:-303 NM_001143773:-303 NM_001347846:-303 AK299924:-303
+
|all_trans=HGNC:19371
 
|chr=chr10
 
|chr=chr10
 
|cpg_percent=0.065
 
|cpg_percent=0.065
Line 22: Line 22:
 
|nearest_refseq=NM_198215
 
|nearest_refseq=NM_198215
 
|nearest_unigene=Hs.607594
 
|nearest_unigene=Hs.607594
−
|num_trans=37
+
|num_trans=220965
 
|species=human
 
|species=human
 
|start=59362502
 
|start=59362502
 
|start_of_center_position=59362551
 
|start_of_center_position=59362551
 
|strand=-
 
|strand=-
−
|transcript_name=ENST00000618427.4 ENST00000618804.5 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 NM_001001971 NM_001166698 NM_001347850 NM_198215 NM_001347851 NM_001347852 NM_001347849 AK316542 BC036453 BC064431 AK289796 AK294805
+
|transcript_name=ENST00000618427.4 ENST00000618804.5 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 AK316542 BC036453 BC064431 AK289796 AK294805
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_109451.1
 
|tss_id=hg_109451.1

Latest revision as of 20:58, 19 July 2021

Basic information about the TSS

TSS ID:hg_109451.1
Species:human
Chr:chr10
TSS Classification:yes
Start:59362502
End:59362600
Strand:-
TSS Score:1
Start of the center position in the TSS region:59362551
End of the center position in the TSS region:59362552



Gene and protein annotation

Transcript_name:ENST00000618427.4 ENST00000618804.5 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 AK316542 BC036453 BC064431 AK289796 AK294805
Distance:0
GeneID:220965
HGNC/MGI_ID:HGNC:19371
UniProt_ID:A0A087X0M7 A0A087X216 A0A087X2G4 A8K181 B7Z2K3 Q8NE31
Gene_name:family with sequence similarity 13 member C
Gene_symbol:FAM13C
Gene_synonyms:
Gene_source:HGNC:19371



Transcript annotation

Transcript_name:ENST00000618427.4 ENST00000618804.5 ENST00000614220.4 ENST00000621119.4 ENST00000622363.4 ENST00000611933.4 ENST00000435852.6 ENST00000619059.4 AK316542 BC036453 BC064431 AK289796 AK294805
Distance:0
Num_trans:220965
All_trans:HGNC:19371



TATA-Box annotation

Distance to TSS:-2
Nearest PromoterID:NM_198215
Entrez ID:220965
Nearest Unigene:Hs.607594
Nearest Refseq:NM_198215
Nearest Ensembl:ENSG00000148541
Gene Name:family with sequence similarity 13 member C
Gene Alias:FAM13C1
Gene Description:family with sequence similarity 13 member C
Gene Type:protein-coding
CpG%:0.065
GC%:0.616915
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
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