Difference between revisions of "TSS:Hg 121694.1"
From referenceTSS
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|SLP2= | |SLP2= | ||
|SLP2A= | |SLP2A= | ||
| − | |all_trans= | + | |all_trans=HGNC:15585 |
|chr=chr11 | |chr=chr11 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=240 | |distance=240 | ||
| − | |distance_to_tss= | + | |distance_to_tss=13596 |
|end=85705502 | |end=85705502 | ||
|end_of_center_position=85705499 | |end_of_center_position=85705499 | ||
|entrez_id=54843 | |entrez_id=54843 | ||
|gc_percent=0.373134 | |gc_percent=0.373134 | ||
| − | |gene_alias=CHR11SYT | + | |gene_alias=CHR11SYT{{!}}EXO4{{!}}PPP1R151{{!}}SGA72M{{!}}SLP2{{!}}SLP2A |
|gene_description=synaptotagmin like 2 | |gene_description=synaptotagmin like 2 | ||
|gene_id=54843 | |gene_id=54843 | ||
| Line 24: | Line 24: | ||
|hgnc_mgi_id=HGNC:15585 | |hgnc_mgi_id=HGNC:15585 | ||
|nearest_ensembl=ENSG00000137501 | |nearest_ensembl=ENSG00000137501 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001365834 |
|nearest_refseq=NM_032379 | |nearest_refseq=NM_032379 | ||
|nearest_unigene=Hs.369520 | |nearest_unigene=Hs.369520 | ||
| − | |num_trans= | + | |num_trans=54843 |
|species=human | |species=human | ||
|start=85705494 | |start=85705494 | ||
|start_of_center_position=85705498 | |start_of_center_position=85705498 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=60(TGCTCTAAAAAG,-,0.00) |
| − | |transcript_name=ENST00000529662 | + | |transcript_name=ENST00000529662.1 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_121694.1 | |tss_id=hg_121694.1 | ||
Latest revision as of 01:25, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 85705498 |
|---|---|
| End of the center position in the TSS region: | 85705499 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000529662.1 |
|---|---|
| Distance: | 240 |
| Num_trans: | 54843 |
| All_trans: | HGNC:15585 |
TATA-Box annotation
| Distance to TSS: | 13596 |
|---|---|
| Nearest PromoterID: | NM_001365834 |
| Entrez ID: | 54843 |
| Nearest Unigene: | Hs.369520 |
| Nearest Refseq: | NM_032379 |
| Nearest Ensembl: | ENSG00000137501 |
| Gene Name: | synaptotagmin like 2 |
| Gene Alias: | CHR11SYT|EXO4|PPP1R151|SGA72M|SLP2|SLP2A |
| Gene Description: | synaptotagmin like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.373134 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 60(TGCTCTAAAAAG,-,0.00) |
