Difference between revisions of "TSS:Hg 12227.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000464796.5:-23 uc001cqz.2:-23 S53678:-23 S53686:-23 NM_003189:-138 NM_001290406:-138 NM_001290403:-138 NM_001290405:299 NM_001290404:299 S53691:3...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |TCL5= |
| + | |all_trans=HGNC:11556 | ||
| + | |bHLHa17= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance=-23 | |distance=-23 | ||
| − | |distance_to_tss= | + | |distance_to_tss=33 |
|end=47232197 | |end=47232197 | ||
| + | |end_of_center_position=47232193 | ||
|entrez_id=6886 | |entrez_id=6886 | ||
|gc_percent=0.696517 | |gc_percent=0.696517 | ||
| − | |gene_alias=SCL | + | |gene_alias=SCL{{!}}TCL5{{!}}bHLHa17{{!}}tal-1 |
| − | |gene_description= | + | |gene_description=TAL bHLH transcription factor 1, erythroid differentiation factor |
|gene_id=6886 | |gene_id=6886 | ||
| − | |gene_name= | + | |gene_name=TAL bHLH transcription factor 1, erythroid differentiation factor |
|gene_source=HGNC:11556 | |gene_source=HGNC:11556 | ||
|gene_symbol=TAL1 | |gene_symbol=TAL1 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_003189 | |nearest_refseq=NM_003189 | ||
|nearest_unigene=Hs.705618 | |nearest_unigene=Hs.705618 | ||
| − | |num_trans= | + | |num_trans=6886 |
|species=human | |species=human | ||
|start=47232187 | |start=47232187 | ||
| + | |start_of_center_position=47232192 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tal-1= |
| − | |transcript_name=ENST00000464796.5 | + | |tata_box=40(CTTTTTCTAGGG,+,0.00) |
| + | |transcript_name=ENST00000464796.5 S53678 S53686 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_12227.1 | |tss_id=hg_12227.1 | ||
Latest revision as of 01:38, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 47232192 |
|---|---|
| End of the center position in the TSS region: | 47232193 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000464796.5 S53678 S53686 |
|---|---|
| Distance: | -23 |
| Num_trans: | 6886 |
| All_trans: | HGNC:11556 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_001290406 |
| Entrez ID: | 6886 |
| Nearest Unigene: | Hs.705618 |
| Nearest Refseq: | NM_003189 |
| Nearest Ensembl: | ENSG00000162367 |
| Gene Name: | TAL bHLH transcription factor 1, erythroid differentiation factor |
| Gene Alias: | SCL|TCL5|bHLHa17|tal-1 |
| Gene Description: | TAL bHLH transcription factor 1, erythroid differentiation factor |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.696517 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 40(CTTTTTCTAGGG,+,0.00) |
