Difference between revisions of "TSS:Hg 12229.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=NM_003189:-16 NM_001290406:-16 NM_001290403:-16 ENST00000464796.5:74 uc001cqz.2:74 S53678:74 S53686:74 NM_001290405:405 NM_001290404:405 S53691:495 |chr...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |TCL5= |
| + | |all_trans=NM_001290403:-16 NM_003189:-16 NM_001290406:69 ENST00000464796.5:74 S53678:74 S53686:74 NM_001290405:405 NM_001290404:405 S53691:495 | ||
| + | |bHLHa17= | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| Line 6: | Line 8: | ||
|distance_to_tss=29 | |distance_to_tss=29 | ||
|end=47232319 | |end=47232319 | ||
| + | |end_of_center_position=47232307 | ||
|entrez_id=6886 | |entrez_id=6886 | ||
|gc_percent=0.79602 | |gc_percent=0.79602 | ||
| − | |gene_alias=SCL | + | |gene_alias=SCL{{!}}TCL5{{!}}bHLHa17{{!}}tal-1 |
| − | |gene_description= | + | |gene_description=TAL bHLH transcription factor 1, erythroid differentiation factor |
|gene_id=6886 | |gene_id=6886 | ||
| − | |gene_name= | + | |gene_name=TAL bHLH transcription factor 1, erythroid differentiation factor |
|gene_source=HGNC:11556 | |gene_source=HGNC:11556 | ||
|gene_symbol=TAL1 | |gene_symbol=TAL1 | ||
| Line 18: | Line 21: | ||
|hgnc_mgi_id=HGNC:11556 | |hgnc_mgi_id=HGNC:11556 | ||
|nearest_ensembl=ENSG00000162367 | |nearest_ensembl=ENSG00000162367 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003189 |
|nearest_refseq=NM_003189 | |nearest_refseq=NM_003189 | ||
|nearest_unigene=Hs.705618 | |nearest_unigene=Hs.705618 | ||
| − | |num_trans= | + | |num_trans=9 |
|species=human | |species=human | ||
|start=47232293 | |start=47232293 | ||
| + | |start_of_center_position=47232306 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NM_003189 | + | |tal-1= |
| + | |transcript_name=NM_003189.5 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_12229.1 | |tss_id=hg_12229.1 | ||
Latest revision as of 01:38, 20 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 47232306 |
|---|---|
| End of the center position in the TSS region: | 47232307 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_003189.5 |
|---|---|
| Distance: | -16 |
| Num_trans: | 9 |
| All_trans: | NM_001290403:-16 NM_003189:-16 NM_001290406:69 ENST00000464796.5:74 S53678:74 S53686:74 NM_001290405:405 NM_001290404:405 S53691:495 |
TATA-Box annotation
| Distance to TSS: | 29 |
|---|---|
| Nearest PromoterID: | NM_003189 |
| Entrez ID: | 6886 |
| Nearest Unigene: | Hs.705618 |
| Nearest Refseq: | NM_003189 |
| Nearest Ensembl: | ENSG00000162367 |
| Gene Name: | TAL bHLH transcription factor 1, erythroid differentiation factor |
| Gene Alias: | SCL|TCL5|bHLHa17|tal-1 |
| Gene Description: | TAL bHLH transcription factor 1, erythroid differentiation factor |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.79602 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
