Difference between revisions of "TSS:Hg 131287.1"
From referenceTSS
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|HOXC11-AS1= | |HOXC11-AS1= | ||
|NCRNA00072= | |NCRNA00072= | ||
| − | |all_trans=NR_003716:-20 DQ926657:50 ENST00000439545.1:-178 NR_047518 | + | |all_trans=NR_003716:-20 DQ926657:50 ENST00000439545.1:-178 NR_047518:-178 |
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| Line 12: | Line 12: | ||
|entrez_id=100124700 | |entrez_id=100124700 | ||
|gc_percent=0.512438 | |gc_percent=0.512438 | ||
| − | |gene_alias=HOXAS | + | |gene_alias=HOXAS{{!}}HOXC-AS4{{!}}HOXC11-AS1{{!}}NCRNA00072 |
|gene_description=HOX transcript antisense RNA | |gene_description=HOX transcript antisense RNA | ||
|gene_id=100124700 | |gene_id=100124700 | ||
| Line 25: | Line 25: | ||
|nearest_refseq=NR_003716 | |nearest_refseq=NR_003716 | ||
|nearest_unigene=Hs.197076 | |nearest_unigene=Hs.197076 | ||
| − | |num_trans= | + | |num_trans=4 |
|species=human | |species=human | ||
|start=53968725 | |start=53968725 | ||
|start_of_center_position=53968730 | |start_of_center_position=53968730 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=NR_003716 | + | |transcript_name=NR_003716.3 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_131287.1 | |tss_id=hg_131287.1 | ||
Latest revision as of 04:53, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 53968730 |
|---|---|
| End of the center position in the TSS region: | 53968731 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NR_003716.3 |
|---|---|
| Distance: | -20 |
| Num_trans: | 4 |
| All_trans: | NR_003716:-20 DQ926657:50 ENST00000439545.1:-178 NR_047518:-178 |
TATA-Box annotation
| Distance to TSS: | 25 |
|---|---|
| Nearest PromoterID: | NR_003716 |
| Entrez ID: | 100124700 |
| Nearest Unigene: | Hs.197076 |
| Nearest Refseq: | NR_003716 |
| Nearest Ensembl: | ENSG00000228630 |
| Gene Name: | HOX transcript antisense RNA |
| Gene Alias: | HOXAS|HOXC-AS4|HOXC11-AS1|NCRNA00072 |
| Gene Description: | HOX transcript antisense RNA |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.512438 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
