Difference between revisions of "TSS:Hg 132830.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=BC037346:-33 |chr=chr12 |cpg_percent=0.105 |distance=-33 |distance_to_tss=-140 |end=98515441 |entrez_id=7112 |gc_percent=0.621891 |gene_alias=CMD1T|LAP2...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |LAP2= |
| + | |LEMD4= | ||
| + | |PRO0868= | ||
| + | |TP= | ||
| + | |all_trans=HGNC:44158 | ||
|chr=chr12 | |chr=chr12 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| Line 6: | Line 10: | ||
|distance_to_tss=-140 | |distance_to_tss=-140 | ||
|end=98515441 | |end=98515441 | ||
| + | |end_of_center_position=98515434 | ||
|entrez_id=7112 | |entrez_id=7112 | ||
|gc_percent=0.621891 | |gc_percent=0.621891 | ||
| − | |gene_alias=CMD1T | + | |gene_alias=CMD1T{{!}}LAP2{{!}}LEMD4{{!}}PRO0868{{!}}TP |
|gene_description=thymopoietin | |gene_description=thymopoietin | ||
|gene_id=100128191 | |gene_id=100128191 | ||
| Line 18: | Line 23: | ||
|hgnc_mgi_id=HGNC:44158 | |hgnc_mgi_id=HGNC:44158 | ||
|nearest_ensembl=ENSG00000120802 | |nearest_ensembl=ENSG00000120802 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_003276 |
|nearest_refseq=NM_003276 | |nearest_refseq=NM_003276 | ||
|nearest_unigene=Hs.11355 | |nearest_unigene=Hs.11355 | ||
| − | |num_trans= | + | |num_trans=100128191 |
|species=human | |species=human | ||
|start=98515425 | |start=98515425 | ||
| + | |start_of_center_position=98515433 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-34(CAGTTTAAAAGG,-,0.00) |
|transcript_name=BC037346 | |transcript_name=BC037346 | ||
|tss_classification=yes | |tss_classification=yes | ||
Latest revision as of 05:27, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 98515433 |
|---|---|
| End of the center position in the TSS region: | 98515434 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC037346 |
|---|---|
| Distance: | -33 |
| Num_trans: | 100128191 |
| All_trans: | HGNC:44158 |
TATA-Box annotation
| Distance to TSS: | -140 |
|---|---|
| Nearest PromoterID: | NM_003276 |
| Entrez ID: | 7112 |
| Nearest Unigene: | Hs.11355 |
| Nearest Refseq: | NM_003276 |
| Nearest Ensembl: | ENSG00000120802 |
| Gene Name: | TMPO antisense RNA 1 |
| Gene Alias: | CMD1T|LAP2|LEMD4|PRO0868|TP |
| Gene Description: | thymopoietin |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.621891 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(CAGTTTAAAAGG,-,0.00) |
