Difference between revisions of "TSS:Hg 159023.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000575601.5:71 | + | |all_trans=NR_034082:0 NR_152840:0 ENST00000669386.1:14 ENST00000671211.1:29 ENST00000663434.1:55 ENST00000575601.5:71 ENST00000667038.1:77 ENST00000649359.1:77 AK021878:83 BC029580:90 ENST00000571689.1:91 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| − | |distance= | + | |distance=0 |
| − | |distance_to_tss= | + | |distance_to_tss=0 |
|end=5192013 | |end=5192013 | ||
| + | |end_of_center_position=5192008 | ||
|entrez_id=100130950 | |entrez_id=100130950 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
| Line 11: | Line 12: | ||
|gene_description=uncharacterized LOC100130950 | |gene_description=uncharacterized LOC100130950 | ||
|gene_id=100130950 | |gene_id=100130950 | ||
| − | |gene_name= | + | |gene_name=ZNF594 divergent transcript |
| − | |gene_source= | + | |gene_source=HGNC:55347 |
| − | |gene_symbol= | + | |gene_symbol=ZNF594-DT |
|gene_synonyms= | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| − | |hgnc_mgi_id= | + | |hgnc_mgi_id=HGNC:55347 |
| − | |nearest_ensembl= | + | |nearest_ensembl= |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_152840 |
|nearest_refseq=NR_034082 | |nearest_refseq=NR_034082 | ||
|nearest_unigene=Hs.668646 | |nearest_unigene=Hs.668646 | ||
| − | |num_trans= | + | |num_trans=11 |
|species=human | |species=human | ||
|start=5192001 | |start=5192001 | ||
| + | |start_of_center_position=5192007 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name= | + | |transcript_name=NR_152840.1 NR_034082.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_159023.1 | |tss_id=hg_159023.1 | ||
Latest revision as of 14:58, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 5192007 |
|---|---|
| End of the center position in the TSS region: | 5192008 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NR_152840.1 NR_034082.2 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | NR_034082:0 NR_152840:0 ENST00000669386.1:14 ENST00000671211.1:29 ENST00000663434.1:55 ENST00000575601.5:71 ENST00000667038.1:77 ENST00000649359.1:77 AK021878:83 BC029580:90 ENST00000571689.1:91 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NR_152840 |
| Entrez ID: | 100130950 |
| Nearest Unigene: | Hs.668646 |
| Nearest Refseq: | NR_034082 |
| Nearest Ensembl: | |
| Gene Name: | ZNF594 divergent transcript |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100130950 |
| Gene Type: | ncRNA |
| CpG%: | 0.13 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
