Difference between revisions of "TSS:Hg 233277.1"
From referenceTSS
| Line 1: | Line 1: | ||
| − | {{ | + | {{TSSDetail |
|all_trans=NR_024540:-4 ENST00000488147.1:-204 | |all_trans=NR_024540:-4 ENST00000488147.1:-204 | ||
| − | + | |chr=chr1 | |
| − | |chr= | + | |cpg_percent=0.02 |
| − | |cpg_percent=0. | + | |distance= |
| − | |distance= | + | |distance_to_tss=1419 |
| − | |distance_to_tss= | + | |end=16020 |
| − | |end= | + | |entrez_id=102465909 |
| − | |entrez_id= | + | |gc_percent=0.656716 |
| − | |gc_percent=0. | + | |gene_alias=hsa-mir-6859-2 |
| − | |gene_alias= | + | |gene_description=microRNA 6859-2 |
| − | |gene_description= | ||
|gene_id=653635 | |gene_id=653635 | ||
| − | |gene_name= | + | |gene_name=MIR6859-2 |
|gene_source=HGNC:38034 | |gene_source=HGNC:38034 | ||
|gene_symbol=WASH7P | |gene_symbol=WASH7P | ||
|gene_synonyms=FAM39F | |gene_synonyms=FAM39F | ||
| − | |gene_type= | + | |gene_type=ncRNA |
|hgnc_mgi_id=HGNC:38034 | |hgnc_mgi_id=HGNC:38034 | ||
| − | |nearest_ensembl= | + | |nearest_ensembl=ENSG00000273874 |
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NR_107062 |
| − | |nearest_refseq= | + | |nearest_refseq=NR_107062 |
| − | |nearest_unigene= | + | |nearest_unigene= |
|num_trans=0 | |num_trans=0 | ||
| + | |peakPage= | ||
| + | |species=human | ||
| + | |start=16013 | ||
| + | |strand=- | ||
| + | |tata_box=-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_233277.1 | |tss_id=hg_233277.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Revision as of 23:57, 12 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: | NR_024540:-4 ENST00000488147.1:-204 |
TATA-Box annotation
| Distance to TSS: | 1419 |
|---|---|
| Nearest PromoterID: | NR_107062 |
| Entrez ID: | 102465909 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_107062 |
| Nearest Ensembl: | ENSG00000273874 |
| Gene Name: | MIR6859-2 |
| Gene Alias: | hsa-mir-6859-2 |
| Gene Description: | microRNA 6859-2 |
| Gene Type: | ncRNA |
| CpG%: | 0.02 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00) |
