Difference between revisions of "TSS:Hg 162326.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:1405 |
|chr=chr17 | |chr=chr17 | ||
|cpg_percent=0.045 | |cpg_percent=0.045 | ||
| − | |distance= | + | |distance=88 |
| − | |distance_to_tss=- | + | |distance_to_tss=-90 |
|end=67044466 | |end=67044466 | ||
|end_of_center_position=67044464 | |end_of_center_position=67044464 | ||
| Line 22: | Line 22: | ||
|nearest_refseq=NM_000727 | |nearest_refseq=NM_000727 | ||
|nearest_unigene=Hs.147989 | |nearest_unigene=Hs.147989 | ||
| − | |num_trans= | + | |num_trans=786 |
|species=human | |species=human | ||
|start=67044461 | |start=67044461 | ||
|start_of_center_position=67044463 | |start_of_center_position=67044463 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-32(GCATTAATAGCA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=ENST00000226021.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_162326.1 | |tss_id=hg_162326.1 | ||
Latest revision as of 16:10, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 67044463 |
|---|---|
| End of the center position in the TSS region: | 67044464 |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000226021.5 |
|---|---|
| Distance: | 88 |
| Num_trans: | 786 |
| All_trans: | HGNC:1405 |
TATA-Box annotation
| Distance to TSS: | -90 |
|---|---|
| Nearest PromoterID: | NM_000727 |
| Entrez ID: | 786 |
| Nearest Unigene: | Hs.147989 |
| Nearest Refseq: | NM_000727 |
| Nearest Ensembl: | ENSG00000108878 |
| Gene Name: | calcium voltage-gated channel auxiliary subunit gamma 1 |
| Gene Alias: | CACNLG |
| Gene Description: | calcium voltage-gated channel auxiliary subunit gamma 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.045 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -32(GCATTAATAGCA,+,0.00) |
