Difference between revisions of "TSS:Hg 16400.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=uc001gse.2:4 AB111893:4 AK123024:61 ENST00000367462.4:-238 NM_199051:-238 |chr=chr1 |cpg_percent=0.01 |distance=4 |distance_to_tss=244 |end=190477644 |e...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |DBCCR1L1= |
| + | |FAM5C= | ||
| + | |all_trans=HGNC:22393 | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=4 | |distance=4 | ||
| − | |distance_to_tss= | + | |distance_to_tss=226 |
|end=190477644 | |end=190477644 | ||
| + | |end_of_center_position=190477639 | ||
|entrez_id=339479 | |entrez_id=339479 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| − | |gene_alias=DBCCR1L | + | |gene_alias=DBCCR1L{{!}}DBCCR1L1{{!}}FAM5C |
|gene_description=BMP/retinoic acid inducible neural specific 3 | |gene_description=BMP/retinoic acid inducible neural specific 3 | ||
|gene_id=339479 | |gene_id=339479 | ||
| Line 21: | Line 24: | ||
|nearest_refseq=NM_199051 | |nearest_refseq=NM_199051 | ||
|nearest_unigene=Hs.65765 | |nearest_unigene=Hs.65765 | ||
| − | |num_trans= | + | |num_trans=339479 |
|species=human | |species=human | ||
|start=190477632 | |start=190477632 | ||
| + | |start_of_center_position=190477638 | ||
|strand=- | |strand=- | ||
| − | |tata_box= | + | |tata_box=-35(CCCCATATAAAG,-,0.00),-33(CCATATAAAGCA,+,0.00) |
| − | |transcript_name= | + | |transcript_name=AB111893 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_16400.1 | |tss_id=hg_16400.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id= |
}} | }} | ||
Latest revision as of 16:46, 20 July 2021
Basic information about the TSS
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| Start of the center position in the TSS region: | 190477638 |
|---|---|
| End of the center position in the TSS region: | 190477639 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AB111893 |
|---|---|
| Distance: | 4 |
| Num_trans: | 339479 |
| All_trans: | HGNC:22393 |
TATA-Box annotation
| Distance to TSS: | 226 |
|---|---|
| Nearest PromoterID: | NM_199051 |
| Entrez ID: | 339479 |
| Nearest Unigene: | Hs.65765 |
| Nearest Refseq: | NM_199051 |
| Nearest Ensembl: | ENSG00000162670 |
| Gene Name: | BMP/retinoic acid inducible neural specific 3 |
| Gene Alias: | DBCCR1L|DBCCR1L1|FAM5C |
| Gene Description: | BMP/retinoic acid inducible neural specific 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -35(CCCCATATAAAG,-,0.00),-33(CCATATAAAGCA,+,0.00) |
