Difference between revisions of "TSS:Hg 169179.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|TGIF= | |TGIF= | ||
| − | |all_trans= | + | |all_trans=HGNC:11776 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| Line 10: | Line 10: | ||
|entrez_id=7050 | |entrez_id=7050 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
| − | |gene_alias=HPE4 | + | |gene_alias=HPE4{{!}}TGIF |
|gene_description=TGFB induced factor homeobox 1 | |gene_description=TGFB induced factor homeobox 1 | ||
|gene_id=7050 | |gene_id=7050 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_003244 | |nearest_refseq=NM_003244 | ||
|nearest_unigene=Hs.373550 | |nearest_unigene=Hs.373550 | ||
| − | |num_trans= | + | |num_trans=7050 |
|species=human | |species=human | ||
|start=3449332 | |start=3449332 | ||
|start_of_center_position=3449339 | |start_of_center_position=3449339 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=-31(AGCTATAAAAGT,-,0.00) |
| − | |transcript_name=ENST00000549253.5 | + | |transcript_name=ENST00000549253.5 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_169179.1 | |tss_id=hg_169179.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=F8VXG3 | + | |uniprot_id=F8VXG3 |
}} | }} | ||
Latest revision as of 18:40, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 3449339 |
|---|---|
| End of the center position in the TSS region: | 3449340 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000549253.5 |
|---|---|
| Distance: | 67 |
| Num_trans: | 7050 |
| All_trans: | HGNC:11776 |
TATA-Box annotation
| Distance to TSS: | -74 |
|---|---|
| Nearest PromoterID: | NM_001278682 |
| Entrez ID: | 7050 |
| Nearest Unigene: | Hs.373550 |
| Nearest Refseq: | NM_003244 |
| Nearest Ensembl: | ENSG00000177426 |
| Gene Name: | TGFB induced factor homeobox 1 |
| Gene Alias: | HPE4|TGIF |
| Gene Description: | TGFB induced factor homeobox 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -31(AGCTATAAAAGT,-,0.00) |
