Difference between revisions of "TSS:Hg 171333.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000579431.1:125 uc060nvm.1:125 ENST00000584201.1:173 uc060nvn.1:173 ENST00000583490.1:-410 NR_102763:-410 uc031rhq.1:-410 AK123079:-410 |chr=chr18...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |all_trans=HGNC:48840 |
|chr=chr18 | |chr=chr18 | ||
|cpg_percent=0.06 | |cpg_percent=0.06 | ||
| − | |distance= | + | |distance=98 |
|distance_to_tss=418 | |distance_to_tss=418 | ||
|end=22168558 | |end=22168558 | ||
| + | |end_of_center_position=22168551 | ||
|entrez_id=100128893 | |entrez_id=100128893 | ||
|gc_percent=0.562189 | |gc_percent=0.562189 | ||
| − | |gene_alias=BM742401 | + | |gene_alias=BM742401{{!}}locus5689 |
|gene_description=GATA6 antisense RNA 1 (head to head) | |gene_description=GATA6 antisense RNA 1 (head to head) | ||
|gene_id=100128893 | |gene_id=100128893 | ||
| Line 14: | Line 15: | ||
|gene_source=HGNC:48840 | |gene_source=HGNC:48840 | ||
|gene_symbol=GATA6-AS1 | |gene_symbol=GATA6-AS1 | ||
| − | |gene_synonyms=locus5689 | + | |gene_synonyms=BM742401 locus5689 |
|gene_type=ncRNA | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:48840 | |hgnc_mgi_id=HGNC:48840 | ||
| + | |locus5689= | ||
|nearest_ensembl=ENSG00000266010 | |nearest_ensembl=ENSG00000266010 | ||
|nearest_promoter_id=NR_102763 | |nearest_promoter_id=NR_102763 | ||
|nearest_refseq=NR_102763 | |nearest_refseq=NR_102763 | ||
|nearest_unigene=Hs.514745 | |nearest_unigene=Hs.514745 | ||
| − | |num_trans= | + | |num_trans=100128893 |
|species=human | |species=human | ||
|start=22168542 | |start=22168542 | ||
| + | |start_of_center_position=22168550 | ||
|strand=- | |strand=- | ||
| − | |transcript_name=ENST00000579431. | + | |transcript_name=ENST00000579431.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_171333.1 | |tss_id=hg_171333.1 | ||
Latest revision as of 19:26, 20 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 22168550 |
|---|---|
| End of the center position in the TSS region: | 22168551 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000579431.2 |
|---|---|
| Distance: | 98 |
| Num_trans: | 100128893 |
| All_trans: | HGNC:48840 |
TATA-Box annotation
| Distance to TSS: | 418 |
|---|---|
| Nearest PromoterID: | NR_102763 |
| Entrez ID: | 100128893 |
| Nearest Unigene: | Hs.514745 |
| Nearest Refseq: | NR_102763 |
| Nearest Ensembl: | ENSG00000266010 |
| Gene Name: | GATA6 antisense RNA 1 (head to head) |
| Gene Alias: | BM742401|locus5689 |
| Gene Description: | GATA6 antisense RNA 1 (head to head) |
| Gene Type: | ncRNA |
| CpG%: | 0.06 |
| GC%: | 0.562189 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
