Personal tools

Difference between revisions of "TSS:Hg 196293.1"

From referenceTSS

Jump to: navigation, search
(Created page with "{{TSSDetail |all_trans=ENST00000469223.5:15 uc064zaj.1:15 ENST00000376643.6:-67 uc064zai.1:-67 AK302926:102 ENST00000376610.6:171 uc064zak.1:171 ENST00000483656.5:213 uc064zal...")
 
 
(2 intermediate revisions by the same user not shown)
Line 1: Line 1:
 
{{TSSDetail
 
{{TSSDetail
−
|all_trans=ENST00000469223.5:15 uc064zaj.1:15 ENST00000376643.6:-67 uc064zai.1:-67 AK302926:102 ENST00000376610.6:171 uc064zak.1:171 ENST00000483656.5:213 uc064zal.1:213 ENST00000334136.9:217 uc004dks.2:217 ENST00000462730.5:238 uc064zam.1:238 ENST00000376619.6:256 uc004dkt.2:256 ENST00000477528.5:277 uc010nig.2:277 AL137696:277 ENST00000465269.5:286 uc064zan.1:286 BC005872:286 AK024083:296 NM_006044:302 AJ011972:302 ENST00000476625.5:304 uc064zao.1:304 AB020708:323 BC069243:324 ENST00000477561.5:332 uc064zap.1:332 ENST00000438518.5:-371 uc064zah.1:-371 AK295884:387 ENST00000423941.5:-390 uc064zag.1:-390 ENST00000481929.5:408 uc064zaq.1:408 ENST00000441703.5:409 uc064zar.1:409 BC011498:412 ENST00000426196.5:414 uc064zas.1:414 AK095124:415 ENST00000489352.5:429 uc064zat.1:429
+
|HD6=
 +
|JM21=
 +
|PPP1R90=
 +
|all_trans=HGNC:14064
 
|chr=chrX
 
|chr=chrX
 
|cpg_percent=0.12
 
|cpg_percent=0.12
Line 6: Line 9:
 
|distance_to_tss=-177
 
|distance_to_tss=-177
 
|end=48801778
 
|end=48801778
 +
|end_of_center_position=48801773
 
|entrez_id=10013
 
|entrez_id=10013
 
|gc_percent=0.701493
 
|gc_percent=0.701493
−
|gene_alias=CPBHM|HD6|JM21|PPP1R90
+
|gene_alias=CPBHM{{!}}HD6{{!}}JM21{{!}}PPP1R90
 
|gene_description=histone deacetylase 6
 
|gene_description=histone deacetylase 6
 
|gene_id=10013
 
|gene_id=10013
Line 21: Line 25:
 
|nearest_refseq=NM_006044
 
|nearest_refseq=NM_006044
 
|nearest_unigene=Hs.6764
 
|nearest_unigene=Hs.6764
−
|num_trans=45
+
|num_trans=10013
 
|species=human
 
|species=human
 
|start=48801766
 
|start=48801766
 +
|start_of_center_position=48801772
 
|strand=+
 
|strand=+
−
|transcript_name=ENST00000469223.5 uc064zaj.1
+
|transcript_name=ENST00000469223.5
 
|tss_classification=yes
 
|tss_classification=yes
 
|tss_id=hg_196293.1
 
|tss_id=hg_196293.1

Latest revision as of 04:28, 21 July 2021

Basic information about the TSS

TSS ID:hg_196293.1
Species:human
Chr:chrX
TSS Classification:yes
Start:48801766
End:48801778
Strand:+
TSS Score:1
Start of the center position in the TSS region:48801772
End of the center position in the TSS region:48801773



Gene and protein annotation

Transcript_name:ENST00000469223.5
Distance:15
GeneID:10013
HGNC/MGI_ID:HGNC:14064
UniProt_ID:
Gene_name:histone deacetylase 6
Gene_symbol:HDAC6
Gene_synonyms:FLJ16239 HD6 JM21 KIAA0901 PPP1R90
Gene_source:HGNC:14064



Transcript annotation

Transcript_name:ENST00000469223.5
Distance:15
Num_trans:10013
All_trans:HGNC:14064



TATA-Box annotation

Distance to TSS:-177
Nearest PromoterID:NM_001321229
Entrez ID:10013
Nearest Unigene:Hs.6764
Nearest Refseq:NM_006044
Nearest Ensembl:ENSG00000094631
Gene Name:histone deacetylase 6
Gene Alias:CPBHM|HD6|JM21|PPP1R90
Gene Description:histone deacetylase 6
Gene Type:protein-coding
CpG%:0.12
GC%:0.701493
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):
Retrieved from "http://reftss.riken.jp/reftss-v3/index.php?title=TSS:Hg_196293.1&oldid=1554874"