Difference between revisions of "TSS:Hg 196294.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |HD6= |
| + | |JM21= | ||
| + | |PPP1R90= | ||
| + | |all_trans=HGNC:14064 | ||
|chr=chrX | |chr=chrX | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
|distance=0 | |distance=0 | ||
| − | |distance_to_tss= | + | |distance_to_tss=-2 |
|end=48802121 | |end=48802121 | ||
| + | |end_of_center_position=48802066 | ||
|entrez_id=10013 | |entrez_id=10013 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
| − | |gene_alias=CPBHM | + | |gene_alias=CPBHM{{!}}HD6{{!}}JM21{{!}}PPP1R90 |
|gene_description=histone deacetylase 6 | |gene_description=histone deacetylase 6 | ||
|gene_id=10013 | |gene_id=10013 | ||
| Line 18: | Line 22: | ||
|hgnc_mgi_id=HGNC:14064 | |hgnc_mgi_id=HGNC:14064 | ||
|nearest_ensembl=ENSG00000094631 | |nearest_ensembl=ENSG00000094631 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001321226 |
|nearest_refseq=NM_006044 | |nearest_refseq=NM_006044 | ||
|nearest_unigene=Hs.6764 | |nearest_unigene=Hs.6764 | ||
| − | |num_trans= | + | |num_trans=10013 |
|species=human | |species=human | ||
|start=48802009 | |start=48802009 | ||
| + | |start_of_center_position=48802065 | ||
|strand=+ | |strand=+ | ||
| − | |tata_box= | + | |tata_box=88(GGCCCGATAAGG,-,0.00) |
| − | |transcript_name=ENST00000462730.5 ENST00000376619.6 ENST00000477528.5 ENST00000465269.5 ENST00000476625.5 ENST00000477561.5 | + | |transcript_name=ENST00000462730.5 ENST00000376619.6 ENST00000477528.5 ENST00000465269.5 ENST00000334136.11 ENST00000476625.5 ENST00000646703.1 ENST00000477561.5 AL137696 BC005872 AK024083 AJ011972 AB020708 BC069243 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_196294.1 | |tss_id=hg_196294.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id=A0A024QZ26 B3KNA1 Q9NSW6 Q9UBN7 | + | |uniprot_id=A0A024QZ26 A0A2R8Y5Z4 A0A2R8YCS4 B3KNA1 Q9BRX7 Q9NSW6 Q9UBN7 |
}} | }} | ||
Latest revision as of 04:28, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 48802065 |
|---|---|
| End of the center position in the TSS region: | 48802066 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000462730.5 ENST00000376619.6 ENST00000477528.5 ENST00000465269.5 ENST00000334136.11 ENST00000476625.5 ENST00000646703.1 ENST00000477561.5 AL137696 BC005872 AK024083 AJ011972 AB020708 BC069243 |
|---|---|
| Distance: | 0 |
| Num_trans: | 10013 |
| All_trans: | HGNC:14064 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NM_001321226 |
| Entrez ID: | 10013 |
| Nearest Unigene: | Hs.6764 |
| Nearest Refseq: | NM_006044 |
| Nearest Ensembl: | ENSG00000094631 |
| Gene Name: | histone deacetylase 6 |
| Gene Alias: | CPBHM|HD6|JM21|PPP1R90 |
| Gene Description: | histone deacetylase 6 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 88(GGCCCGATAAGG,-,0.00) |
