Difference between revisions of "TSS:Hg 19981.1"
From referenceTSS
(Created page with "{{TSSDetail |all_trans=ENST00000623515.2:338 uc010ynx.2:338 NR_027251:339 BC032412:469 |chr=chr2 |cpg_percent=0.125 |distance=338 |distance_to_tss=-257 |end=43226872 |entrez_i...") |
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans= | + | |ERF-2= |
| + | |ERF2= | ||
| + | |RNF162C= | ||
| + | |TIS11D= | ||
| + | |all_trans=HGNC:49275 | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| Line 6: | Line 10: | ||
|distance_to_tss=-257 | |distance_to_tss=-257 | ||
|end=43226872 | |end=43226872 | ||
| + | |end_of_center_position=43226864 | ||
|entrez_id=678 | |entrez_id=678 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
| − | |gene_alias=BRF2 | + | |gene_alias=BRF2{{!}}ERF-2{{!}}ERF2{{!}}RNF162C{{!}}TIS11D |
|gene_description=ZFP36 ring finger protein like 2 | |gene_description=ZFP36 ring finger protein like 2 | ||
|gene_id=100129726 | |gene_id=100129726 | ||
| Line 21: | Line 26: | ||
|nearest_refseq=NM_006887 | |nearest_refseq=NM_006887 | ||
|nearest_unigene=Hs.503093 | |nearest_unigene=Hs.503093 | ||
| − | |num_trans= | + | |num_trans=100129726 |
|species=human | |species=human | ||
|start=43226854 | |start=43226854 | ||
| + | |start_of_center_position=43226863 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=ENST00000623515 | + | |transcript_name=ENST00000623515.2 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_19981.1 | |tss_id=hg_19981.1 | ||
Latest revision as of 05:45, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 43226863 |
|---|---|
| End of the center position in the TSS region: | 43226864 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000623515.2 |
|---|---|
| Distance: | 338 |
| Num_trans: | 100129726 |
| All_trans: | HGNC:49275 |
TATA-Box annotation
| Distance to TSS: | -257 |
|---|---|
| Nearest PromoterID: | NM_006887 |
| Entrez ID: | 678 |
| Nearest Unigene: | Hs.503093 |
| Nearest Refseq: | NM_006887 |
| Nearest Ensembl: | ENSG00000152518 |
| Gene Name: | long intergenic non-protein coding RNA 1126 |
| Gene Alias: | BRF2|ERF-2|ERF2|RNF162C|TIS11D |
| Gene Description: | ZFP36 ring finger protein like 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
