Difference between revisions of "TSS:Hg 219257.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|RAP1= | |RAP1= | ||
| − | |all_trans= | + | |all_trans=HGNC:17676 |
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| Line 10: | Line 10: | ||
|entrez_id=27342 | |entrez_id=27342 | ||
|gc_percent=0.542289 | |gc_percent=0.542289 | ||
| − | |gene_alias=RABEX5 | + | |gene_alias=RABEX5{{!}}RAP1{{!}}rabex-5 |
|gene_description=RAB guanine nucleotide exchange factor 1 | |gene_description=RAB guanine nucleotide exchange factor 1 | ||
|gene_id=27342 | |gene_id=27342 | ||
| Line 23: | Line 23: | ||
|nearest_refseq=NM_014504 | |nearest_refseq=NM_014504 | ||
|nearest_unigene=Hs.530053 | |nearest_unigene=Hs.530053 | ||
| − | |num_trans= | + | |num_trans=27342 |
|rabex-5= | |rabex-5= | ||
|species=human | |species=human | ||
| Line 29: | Line 29: | ||
|start_of_center_position=66772019 | |start_of_center_position=66772019 | ||
|strand=+ | |strand=+ | ||
| − | |transcript_name=CU677267 BT007107 DQ230533 DQ230534 DQ230535 | + | |transcript_name=ENST00000484547.7 CU677267 BT007107 DQ230533 DQ230534 DQ230535 |
|tss_classification=no | |tss_classification=no | ||
|tss_id=hg_219257.1 | |tss_id=hg_219257.1 | ||
|tss_score=1 | |tss_score=1 | ||
| − | |uniprot_id= | + | |uniprot_id=A0A1W2PPY0 Q3HKR1 |
}} | }} | ||
Latest revision as of 07:16, 21 July 2021
Basic information about the TSS
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|
| Start of the center position in the TSS region: | 66772019 |
|---|---|
| End of the center position in the TSS region: | 66772020 |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000484547.7 CU677267 BT007107 DQ230533 DQ230534 DQ230535 |
|---|---|
| Distance: | -120 |
| Num_trans: | 27342 |
| All_trans: | HGNC:17676 |
TATA-Box annotation
| Distance to TSS: | 16138 |
|---|---|
| Nearest PromoterID: | NM_001287061 |
| Entrez ID: | 27342 |
| Nearest Unigene: | Hs.530053 |
| Nearest Refseq: | NM_014504 |
| Nearest Ensembl: | ENSG00000154710 |
| Gene Name: | RAB guanine nucleotide exchange factor 1 |
| Gene Alias: | RABEX5|RAP1|rabex-5 |
| Gene Description: | RAB guanine nucleotide exchange factor 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.542289 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
