Difference between revisions of "TSS:Hg 219733.1"
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
| − | |all_trans=ENST00000223951.10:-87 | + | |HELN1= |
| + | |HUB= | ||
| + | |all_trans=NM_001351471:84 NM_001351459:84 NM_001351465:84 NM_001351476:84 NM_001171197:84 NM_001385702:84 NM_001385703:84 NM_001385704:84 ENST00000223951.10:-87 BC030692:-87 LQ520546:-87 ENST00000380110.8:118 NM_001385705:237 NM_001385707:237 NM_001171195:-427 NM_001351470:-427 NM_001351475:-427 NM_001385693:-427 NM_001385698:-427 NM_001385699:-427 NM_001385700:-427 NM_001385701:-427 BC035004:-427 BC042393:-452 ENST00000544538.5:-455 | ||
|chr=chr9 | |chr=chr9 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| − | |distance= | + | |distance=84 |
| − | |distance_to_tss= | + | |distance_to_tss=-84 |
|end=23821393 | |end=23821393 | ||
| + | |end_of_center_position=23821393 | ||
|entrez_id=1993 | |entrez_id=1993 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| − | |gene_alias=HEL-N1 | + | |gene_alias=HEL-N1{{!}}HELN1{{!}}HUB |
|gene_description=ELAV like RNA binding protein 2 | |gene_description=ELAV like RNA binding protein 2 | ||
|gene_id=1993 | |gene_id=1993 | ||
| − | |gene_name=ELAV like | + | |gene_name=ELAV like RNA binding protein 2 |
|gene_source=HGNC:3313 | |gene_source=HGNC:3313 | ||
|gene_symbol=ELAVL2 | |gene_symbol=ELAVL2 | ||
| Line 18: | Line 21: | ||
|hgnc_mgi_id=HGNC:3313 | |hgnc_mgi_id=HGNC:3313 | ||
|nearest_ensembl=ENSG00000107105 | |nearest_ensembl=ENSG00000107105 | ||
| − | |nearest_promoter_id= | + | |nearest_promoter_id=NM_001351459 |
|nearest_refseq=NM_004432 | |nearest_refseq=NM_004432 | ||
|nearest_unigene=Hs.166109 | |nearest_unigene=Hs.166109 | ||
| − | |num_trans= | + | |num_trans=25 |
|species=human | |species=human | ||
|start=23821392 | |start=23821392 | ||
| + | |start_of_center_position=23821392 | ||
|strand=- | |strand=- | ||
| − | |transcript_name= | + | |transcript_name=NM_001385704.1 NM_001351459.2 NM_001351465.2 NM_001351471.2 NM_001351476.2 NM_001171197.2 NM_001385702.1 NM_001385703.1 |
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_219733.1 | |tss_id=hg_219733.1 | ||
Latest revision as of 07:21, 21 July 2021
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | 23821392 |
|---|---|
| End of the center position in the TSS region: | 23821393 |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | NM_001385704.1 NM_001351459.2 NM_001351465.2 NM_001351471.2 NM_001351476.2 NM_001171197.2 NM_001385702.1 NM_001385703.1 |
|---|---|
| Distance: | 84 |
| Num_trans: | 25 |
| All_trans: | NM_001351471:84 NM_001351459:84 NM_001351465:84 NM_001351476:84 NM_001171197:84 NM_001385702:84 NM_001385703:84 NM_001385704:84 ENST00000223951.10:-87 BC030692:-87 LQ520546:-87 ENST00000380110.8:118 NM_001385705:237 NM_001385707:237 NM_001171195:-427 NM_001351470:-427 NM_001351475:-427 NM_001385693:-427 NM_001385698:-427 NM_001385699:-427 NM_001385700:-427 NM_001385701:-427 BC035004:-427 BC042393:-452 ENST00000544538.5:-455 |
TATA-Box annotation
| Distance to TSS: | -84 |
|---|---|
| Nearest PromoterID: | NM_001351459 |
| Entrez ID: | 1993 |
| Nearest Unigene: | Hs.166109 |
| Nearest Refseq: | NM_004432 |
| Nearest Ensembl: | ENSG00000107105 |
| Gene Name: | ELAV like RNA binding protein 2 |
| Gene Alias: | HEL-N1|HELN1|HUB |
| Gene Description: | ELAV like RNA binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
